Filter by Category
| Ontology Name | Format | Version | Author | Uploaded On | Status | Description | categories |
|---|---|---|---|---|---|---|---|
| African Traditional Medicine (ATMO) |
OBOF | 1.0.1 | Ghislain Atemezing | 04/15/2008 | Description: African Traditional Medicine Ontology (ATMO) describes the actors' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom's roles and the disease consideration.
Categories : Health |
5058 | |
| Amino Acid (amino-acid) |
OWL | 1.2 | 01/16/2007 | Explore | Description: An ontology of amino acids and their properties.
Categories : Other |
2801 | |
| Amphibian gross anatomy (AAO) |
OBOF | 1.8 | AmphiAnat list | 07/30/2008 | Explore | Description: A structured controlled vocabulary of the anatomy of Amphibians.
Categories : Animal Gross Anatomy , Gross Anatomy , Anatomy |
2812 2811 2810 |
| Animal natural history and life history | PROTEGE | See Remote Site | Http://animaldiversity Administrators | 01/06/2009 |
Categories : Anatomy |
2810 | |
| Basic Vertebrate Anatomy (basic-vertebrate-gross-anatomy) |
OWL | 1.1 | 01/16/2007 | Explore | Description: A basic vertebrate anatomy derived mainly from FMA.
Categories : Gross Anatomy |
2811 | |
| Bilateria anatomy (BILA) |
OBOF | See Remote Site | Thorsten Heinrich | 01/06/2009 | Description: An ontology of anatomy for animals that have bilateral symmetry.
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| Biological imaging methods (FBbi) |
OBOF | 1.1 | Image Administrators | 07/30/2008 | Explore | Description: This CV covers sample preparation, visualization and imaging methods.
Categories : Imaging , Experimental Conditions |
5057 2805 |
| Biological process (GO) |
OBOF | 1.403 | Gene Ontology | 01/06/2009 | Explore | Description: A controlled vocabulary of gene and gene product attributes related to biological process.
Categories : Genomic and Proteomic |
2806 |
| Biomedical Resource Ontology (BRO) |
OWL | 2.5 | Daniel Rubin, Natasha Noy | 12/09/2008 | Explore | Description: An ontology of compuational biomedical resources.
Categories : Biomedical Resources |
5059 |
| BioTop | OWL | dev | Holger Stenzhorn | 11/10/2008 | Explore |
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| BIRNLex (birnlex) |
OWL | 1.3.1 | William Bug | 03/24/2008 | Explore | Description: The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design.
Categories : Anatomy , Imaging |
2810 5057 |
| Bleeding History Phenotype (BHO) |
PROTEGE | 0.3 | Andreas Mauer | 09/05/2008 | Explore | Description: An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.
Categories : Phenotype |
2807 |
| BRENDA tissue / enzyme source (BTO) |
OBOF | See Remote Site | BrendaTissue Administrators | 01/06/2009 | Description: A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.
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| C. elegans development (WBls) |
OBOF | 1.3 | Worm_development Administrators | 07/30/2008 | Explore | Description: A structured controlled vocabulary of the development of Caenorhabditis elegans.
Categories : Development , Animal Development |
2803 2818 |
| C. elegans gross anatomy (WBbt) |
OBOF | 1.9 | Http://brebiou Administrators | 10/30/2008 | Explore | Description: A structured controlled vocabulary of the anatomy of Caenorhabditis elegans.
Categories : Animal Gross Anatomy , Gross Anatomy , Anatomy |
2812 2811 2810 |
| C. elegans phenotype (WBPhenotype) |
OBOF | 1.60 | Http://tazendra Administrators | 01/06/2009 | Explore | Description: A structured controlled vocabulary of Caenorhabditis elegans phenotypes
Categories : Phenotype |
2807 |
| Cancer Research and Management ACGT Master Ontology | OWL | 1.0 | Mathias Brochhausen | 11/04/2008 | Explore |
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| Cardiac Electrophysiology Ontology (EP) |
OWL | 1.0 | Raimond L. Winslow, PhD | 12/16/2008 | Explore | Description: The Cardiac Electrophysiology Ontology contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and fluorescence imaging techniques applied at the cell level and multi-channel fluorescence imaging techniques applied at the cell, tissue and whole heart levels.
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| carol | OWL | 1.0 | mich | 09/21/2008 | Explore |
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| Cell Cycle Ontology (A. thaliana) (CCO) |
OBOF | 1.02 | Erick Antezana | 09/03/2008 | Explore | Description: An ontology that integrates and manages knowledge about the cell cycle components and regulatory aspects of A. thaliana.
Categories : Biological Process , Arabadopsis |
5060 5061 |
| Cell Cycle Ontology (H. sapiens) (CCO) |
OBOF | 1.01 | Erick Antezana | 05/27/2008 | Explore | Description: An ontology that integrates and manages knowledge about the cell cycle components and regulatory aspects of H. sapiens.
Categories : Biological Process , Human |
5060 5062 |
| Cell Cycle Ontology (S. cerevisiae) (CCO) |
OBOF | 1.01 | Erick Antezana | 05/27/2008 | Explore | Description: An ontology that integrates and manages knowledge about the cell cycle components and regulatory aspects of S. cerevisiae.
Categories : Biological Process , Yeast |
5060 5064 |
| Cell Cycle Ontology (S. pombe) (CCO) |
OBOF | 1.01 | Erick Antezana | 05/27/2008 | Explore | Description: An ontology that integrates and manages knowledge about the cell cycle components and regulatory aspects S. pombe.
Categories : Yeast , Biological Process |
5064 5060 |
| Cell type (CL) |
OBOF | 1.38 | Cell Administrators | 12/10/2008 | Explore | Description: The Cell Ontology is designed as a structured controlled vocabulary for cell types. This ontology is not organism specific; indeed it includes cell types from prokaryotes to mammals, including plants and fungi.
Categories : Anatomy |
2810 |
| Cellular component (GO) |
OBOF | 1.403 | Gene Ontology | 01/06/2009 | Explore | Description: A controlled vocabulary of gene and gene product attributes related to cellular component.
Categories : Genomic and Proteomic |
2806 |
| Cereal plant development (GRO) |
OBOF | See Remote Site | Po_anatomy Administrators | 01/06/2009 | Description: A controlled vocabulary of describe phenotypic traits in cereal plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature cereal plant.
Categories : Plant Development , Development , Plant |
2819 2803 5063 | |
| Cereal plant gross anatomy (PO) |
OBOF | See Remote Site | Po_anatomy Administrators | 01/06/2009 | Description: A controlled vocabulary for plant structure (anatomy) and growth stages.
Categories : Plant , Plant Anatomy , Anatomy |
5063 2816 2810 | |
| Cereal plant trait (TO) |
OBOF | 1.60 | Po_anatomy Administrators | 07/30/2008 | Explore |
Categories : Phenotype |
2807 |
| Chemical entities of biological interest (ChEBI) |
OBOF | 1.48 | Chebi Administrators | 12/18/2008 | Explore | Description: A structured classification of chemical compounds of biological relevance.
Categories : Chemical |
2802 |
| Common Anatomy Reference Ontology (CARO) |
OBOF | 1.3 | Melissa Haendel | 08/24/2007 | Explore | Description: The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies
Categories : Anatomy |
2810 |
| Comparative Data Analysis Ontology (CDAO) |
OWL | 1.26 | Enrico Pontelli | 09/26/2008 | Explore | Description: An ontology intended to provide a common ontological framework for evolutionary analysis regardless of the type of data involved.
Categories : Experimental Conditions |
2805 |
| Dendritic cell | OBOF | 1.2 | Lindsay Cowell | 12/29/2008 |
Categories : Anatomy |
2810 | |
| Dictyostelium discoideum anatomy (DDANAT) |
OBOF | 1.9 | Rex Chisholm | 07/30/2008 | Explore | Description: A structured controlled vocabulary of the anatomy of the slime-mould Dictyostelium discoideum.
Categories : Gross Anatomy , Microbial Anatomy , Anatomy |
2811 2815 2810 |
| Drosophila development (FBdv) |
OBOF | 1.10 | Http://obo Administrators | 12/12/2008 | Explore | Description: A structured controlled vocabulary of the development of Drosophila melanogaster.
Categories : Animal Development , Development |
2818 2803 |
| Drosophila gross anatomy (FBbt) |
OBOF | 1.25 | Http://obo Administrators | 07/30/2008 | Explore | Description: A structured controlled vocabulary of the anatomy of Drosophila melanogaster.
Categories : Anatomy , Gross Anatomy , Animal Gross Anatomy |
2810 2811 2812 |
| Environment Ontology (ENVO) |
OBOF | 1.46 | Envo Administrators | 12/18/2008 | Explore | Description: Ontology of environmental features and habitats
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| Epoch Clinical Trial Ontologies (ClinicalTrialOntology) |
OWL | 0.9 | Ravi Shankar, Stanford Medical Informatics | 03/20/2007 | Explore |
Categories : Experimental Conditions |
2805 |
| Event (INOH pathway ontology) (IEV) |
OBOF | See Remote Site | Event Administrators | 01/06/2009 | Description: An ontology that organizes the concepts and terms of pathway objects such as sub-pathways, biological processes and experimental environments appearing in the cellular pathway (e.g. signal transductions, disease pathways, metabolic pathways, etc.) The concepts in the Event Ontology were manually extracted from scientific articles and text books. Each concept has a link to Gene Ontology if possible.
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| Evidence codes (ECO) |
OBOF | 1.17 | Michael Ashburner | 05/29/2008 | Explore | Description: A rich ontology for experimental and other evidence statements.
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| eVOC (Expressed Sequence Annotation for Humans) (EV) |
OBOF | See Remote Site | Evoc Administrators | 01/06/2009 | Description: Provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique, microarray platform, pathology, pooling, tissue preparation and treatment.
Categories : Phenotype |
2807 | |
| Experimental Factor Ontology (EFO) |
OWL | 0.9 | James Malone | 01/06/2009 | Explore | Description: The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental factors in ArrayExpress. The ontology has been developed to increase the richness of the annotations that are currently made in the ArrayExpress repository, to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The methodology employed in the development of EFO involves construction of mappings to multiple existing domain specific ontologies, such as the Disease Ontology and Cell Type Ontology. This is achieved using a combination of automated and manual curation steps and the use of a phonetic matching algorithm. The ontology is evaluated with use cases from the ArrayExpress repository.
Categories : Experimental Conditions |
2805 |
| Family Health History Ontology (FHHO) |
OWL | 1.0 | Jane Peace | 09/23/2008 | Explore | Description: The FHHO facilitates representing the family health histories of persons related by biological and/or social family relationships (e.g. step, adoptive) who share genetic, behavioral, and/or environmental risk factors for disease. SWRL rules are included to compute 3 generations of biological relationships based on parentage and family history findings based on personal health findings.
Categories : Health |
5058 |
| Fly taxonomy (FBsp) |
OBOF | 1.1 | Michael Ashburner | 08/24/2007 | Explore | Description: The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase.
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| FlyBase Controlled Vocabulary | OBOF | 1.13 | Evidence_code Administrators | 07/30/2008 | Explore |
Categories : Vocabularies |
2809 |
| FMA (FMA) |
OWL | 1.4 | 01/16/2007 | Explore | Description: FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.
Categories : Anatomy |
2810 | |
| Foundational Model of Anatomy (subset) (FMA) |
OBOF | See Remote Site | Http://obo Administrators | 01/06/2009 | Description: FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.
Categories : Other |
2801 | |
| Fungal gross anatomy (FAO) |
OBOF | 1.1 | Fungal_anatomy Administrators | 07/30/2008 | Explore | Description: A structured controlled vocabulary for the anatomy of fungi.
Categories : Gross Anatomy , Microbial Anatomy , Anatomy |
2811 2815 2810 |
| Galen | OWL | 1.1 | 01/16/2007 | Explore |
Categories : Other |
2801 | |
| Gene Regulation Ontology (BOOTStrep) |
OWL | See Remote Site | Vivian Lee | 01/06/2009 | Description: A conceptual model for the domain of gene regulation.
Categories : Other |
2801 | |
| Gene Regulation Ontology (GRO) (GRO) |
OWL | 0.3 | Vivian Lee | 06/25/2008 | Explore |
Categories : Genomic and Proteomic |
2806 |
| Habronattus courtship | PROTEGE | See Remote Site | Http://www Administrators | 01/06/2009 | Description: The Habronattus courtship ontology is an ontology of terms used to describe the courtship display of the jumping spider Habronattus californicus. It was constructed from observations of video clips provided to the curator by Wayne Maddison.
Categories : Other |
2801 | |
| Human developmental anatomy, abstract version (EHDAA) |
OBOF | 1.3 | EMAP Administrators | 07/30/2008 | Explore |
Categories : Gross Anatomy , Animal Gross Anatomy , Human Developmental Anatomy , Anatomy |
2811 2812 2814 2810 |
| Human developmental anatomy, timed version (EHDA) |
OBOF | 1.3 | EMAP Administrators | 07/30/2008 | Explore |
Categories : Gross Anatomy , Human Developmental Anatomy , Animal Gross Anatomy , Anatomy |
2811 2814 2812 2810 |
| Human disease (DOID) |
OBOF | 1.22 | Human_disease Administrators | 12/27/2008 | Explore | Description: Creating a comprehensive hierarchical controlled vocabulary for human disease representation.
Categories : Phenotype |
2807 |
| human phenotype ontology (HP) |
OBOF | 1.9 | Peter Robinson | 01/06/2009 | Explore |
Categories : Phenotype |
2807 |
| ICD9 | LEXGRID | 9 | 05/16/2008 | Explore | Description: International Disease Classification.
Categories : Vocabularies |
2809 | |
| Infectious disease (IDO) |
OBOF | 1.1 | Lindsay Cowell ido | 03/26/2008 | Explore | Description: An ontology of infectious diseases.
Categories : Phenotype |
2807 |
| Loggerhead nesting | OBOF | See Remote Site | Http://www Administrators | 01/06/2009 | Description: The loggerhead nesting ontology is an ontology of terms used and defined in a published ethogram of loggerhead nesting (Hailman, J. P. and Elowson, A. M. 1992. Ethogram of the nesting female loggerhead (Caretta caretta). Herpetologica 48:1-30).
Categories : Ethology |
2804 | |
| Maize gross anatomy (ZEA) |
OBOF | See Remote Site | Zea_mays_anatomy Administrators | 01/06/2009 |
Categories : Plant Anatomy |
2816 | |
| Mammalian phenotype (MP) |
OBOF | 1.229 | JAX list | 12/21/2008 | Explore | Description: The Mammalian Phenotype Ontology is under development as a community effort to provide standard terms for annotating mammalian phenotypic data.
Categories : Phenotype |
2807 |
| Mass spectrometry (MS) |
OBOF | See Remote Site | Psi-mod Administrators | 01/06/2009 | Description: A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. Developed by the HUPO Proteomics Standards Initiative.
Categories : Other |
2801 | |
| Medaka fish anatomy and development (MFO) |
OBOF | 1.1 | Medaka_ontology Administrators | 07/30/2008 | Explore | Description: A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.
Categories : Animal Gross Anatomy , Fish Anatomy , Gross Anatomy , Anatomy |
2812 2813 2811 2810 |
| MHC Ontology (MHC) |
OWL | 1.0 | David S. DeLuca | 03/11/2008 | Description: The MHC ontology contains terms necessary for describing and categorizing concepts related to MHC, in general, and for a number of model species, and also for humans.
Categories : Genomic and Proteomic |
2806 | |
| Microarray experimental conditions (MO) |
OWL | 1.3.1.1 | MGED | 11/05/2008 | Explore | Description: Concepts, definitions, terms, and resources for standardized description of a microarray experiment in support of MAGE v.1.
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| Molecular function (GO) |
OBOF | 1.403 | Gene Ontology | 01/06/2009 | Explore | Description: A controlled vocabulary of gene and gene product attributes related to molecular function.
Categories : Genomic and Proteomic |
2806 |
| Molecule role (INOH Protein name/family name ontology) (IMR) |
OBOF | See Remote Site | Event Administrators | 01/06/2009 | Description: A structured controlled vocabulary of pathway centric biological processes.
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| Mosquito gross anatomy (TGMA) |
OBOF | 1.9 | C. Louis | 08/20/2008 | Explore | Description: A structured controlled vocabulary of the anatomy of mosquitoes.
Categories : Anatomy , Animal Gross Anatomy , Gross Anatomy |
2810 2812 2811 |
| Mosquito insecticide resistance (MIRO) |
OBOF | 1.332 | C. Louis | 01/06/2009 | Description: Application ontology for entities related to insecticide resistance in mosquitos.
Categories : Phenotype |
2807 | |
| Mouse adult gross anatomy (MA) |
OBOF | 1.190 | Anatomy JAX | 10/30/2008 | Explore | Description: A structured controlled vocabulary of the adult anatomy of the mouse (Mus).
Categories : Gross Anatomy , Anatomy , Animal Gross Anatomy , Mouse Anatomy |
2811 2810 2812 2817 |
| mouse anatomy (mouse_anatomy) |
OWL | 1.0 | Sam | 12/03/2008 | Explore | Description: It is used for OAEI competition
Categories : Mouse Anatomy |
2817 |
| Mouse gross anatomy and development (EMAP) |
OBOF | 1.2 | EMAP Administrators | 07/30/2008 | Explore | Description: A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).
Categories : Animal Gross Anatomy , Gross Anatomy , Mouse Anatomy , Anatomy |
2812 2811 2817 2810 |
| Mouse pathology (MPATH) |
OBOF | 1.1 | Paul Schofield | 12/08/2006 | Explore | Description: A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes.
Categories : Phenotype |
2807 |
| Multiple alignment (RO) |
OBOF | 1.1 | Julie Thompson | 12/08/2006 | Explore |
Categories : Genomic and Proteomic |
2806 |
| NanoParticle Ontology (NPO) |
OWL | 2008-12-09 beta (inferred) | Nathan Baker | 12/17/2008 | Explore | Description: An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.
Categories : Chemical |
2802 |
| NCBI organismal classification | OBOF | 1.2 | NCBI information | 11/05/2008 |
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| nci anatomy (nci_anatomy) |
OWL | 1.0 | Sam | 12/03/2008 | Explore | Description: It is used for OAEI competition.
Categories : Anatomy |
2810 |
| NCI Thesaurus (NCIt) |
OWL | 7.06D | NCICB Support | 08/24/2007 | Explore | Description: A vocabulary for clinical care, translational and basic research, and public information and administrative activities.
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| NEMO_Citation | OWL | 0.5 | Dejing Dou | 03/31/2008 |
Categories : Imaging |
5057 | |
| NEMO_ERP | OWL | 0.5 | Dejing Dou | 03/31/2008 |
Categories : Imaging |
5057 | |
| NEMO_Functional | OWL | 0.5 | Dejing Dou | 03/31/2008 |
Categories : Imaging |
5057 | |
| NIFSTD (nif) |
OWL | 0.5 | William Bug | 02/26/2008 | Explore |
Categories : Animal Development , Protein , Anatomy , Taxonomic Classification , Genomic and Proteomic , Animal Gross Anatomy , Phenotype , Imaging , Experimental Conditions , Ethology |
2818 2821 2810 2808 2806 2812 2807 5057 2805 2804 |
| NMR-instrument specific component of metabolomics investigations (NMR) |
OWL | See Remote Site | Https://svn Administrators | 01/06/2009 | Description: Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation.
Categories : Other |
2801 | |
| OBO relationship types (OBO_REL) |
OBOF | 1.1 | Chris Mungall | 07/30/2008 | Explore | Description: Defines core relations used in all OBO ontologies.
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| Ontology for Biomedical Investigations (OBI) |
OWL | 1.0.1213 | OBI Consortium | 01/05/2009 | Explore | Description: OBI models the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it.
Categories : Experimental Conditions |
2805 |
| Ontology for biomedical investigations | OWL | See Remote Site | OBI Users | 01/06/2009 |
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| Ontology for disease genetic investigation | OWL | 0.7.1 | Yu Lin | 04/21/2008 | Explore | Description: The ontology for the original papers investigating the relations between genetic factors and disease.
Categories : Experimental Conditions |
2805 |
| Ontology for Genetic Interval | OWL | 0.14 | Yu Lin | 05/13/2008 | Explore |
Categories : Genomic and Proteomic |
2806 |
| Ontology of Clinical Research (OCRe) (OCRe) |
OWL | 0.9 | Ida Sim | 01/22/2008 | Explore |
Categories : Experimental Conditions |
2805 |
| Ontology of Geographical Region | OWL | 1.1 | Yu Lin | 03/07/2008 | Explore |
Categories : Vocabularies |
2809 |
| Ontology of Glucose Metabolism Disorder | OWL | 1.2 | Yu Lin | 04/21/2008 | Explore |
Categories : Health |
5058 |
| Ontology of Physics for Biology (OPB) |
OWL | 0.81 | Daniel L. Cook | 12/10/2008 | Explore | Description: The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (i.e., multiscale; e.g., molecules to organisms) and multiple physical domains (i.e., multidomain; e.g.,fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.
Categories : Biological Process |
5060 |
| Pathogen transmission (TRANS) |
OBOF | 1.7 | Human_disease Administrators | 01/04/2009 | Explore | Description: This vocabulary describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.
Categories : Phenotype |
2807 |
| Pathway ontology (PW) |
OBOF | See Remote Site | Victoria Petri | 01/06/2009 |
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| Phenotypic quality (PATO) |
OBOF | 1.122 | Quality Administrators | 12/20/2008 | Explore | Description: Phenotypic qualities (properties).
Categories : Phenotype |
2807 |
| Physico-chemical methods and properties (FIX) |
OBOF | See Remote Site | Chebi Administrators | 01/06/2009 |
Categories : Chemical |
2802 | |
| Physico-chemical process (REX) |
OBOF | 1.13 | Chebi Administrators | 07/30/2008 | Explore |
Categories : Physicochemical |
2822 |
| Plant environmental conditions (EO) |
OBOF | 1.5 | Pankaj Jaiswal | 07/30/2008 | Explore |
Categories : Phenotype |
2807 |
| Plant growth and developmental stage (PO) |
OBOF | 1.33 | Po_anatomy Administrators | 07/30/2008 | Explore | Description: A controlled vocabulary of growth and developmental stages in various plants.
Categories : Plant Development , Development |
2819 2803 |
| Plant structure (PO) |
OBOF | 1.62 | Po_anatomy Administrators | 11/08/2008 | Explore | Description: A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization.
Categories : Anatomy , Plant Anatomy , Gross Anatomy |
2810 2816 2811 |
| Problem-Oriented Medical Record Ontology | OWL | 0.75 | Chimezie Ogbuji | 08/31/2007 | Explore |
Categories : Health |
5058 |
| ProPreO - Proteomics Provenance ontology (ProPreO) |
OWL | 1.1 | Satya S. Sahoo | 11/25/2008 | Explore | Description: A comprehensive proteomics experimental data and process provenance ontology.
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| Protein modification (MOD) |
OBOF | See Remote Site | Psi-mod Administrators | 01/06/2009 | Description: PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG).
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| Protein Ontology | OWL | 2.0 | Amandeep S. Sidhu | 12/21/2006 | Explore |
Categories : Protein , Genomic and Proteomic |
2821 2806 |
| PRotein Ontology (PRO) (PRO) |
OBOF | 1.6 | Darren Natale | 11/04/2008 | Explore |
Categories : Genomic and Proteomic |
2806 |
| Protein-protein interaction (MI ) |
OBOF | See Remote Site | Psi-mi Administrators | 01/06/2009 | Description: A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative.
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| Proteomics data and process provenance | OWL | See Remote Site | Satya Sahoo | 01/06/2009 |
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| Pseudogene | OBOF | 0.1 | Gerstein Lab | 11/18/2008 | Explore |
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| RadLex (RID) |
PROTEGE | 2.0 | 12/19/2007 | Explore |
Categories : Imaging |
5057 | |
| Sample processing and separation techniques (SEP) |
OBOF | See Remote Site | Http://psidev Administrators | 01/06/2009 | Description: A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on.
Categories : Experimental Conditions |
2805 | |
| Sequence Ontology (SO) |
OBOF | 1.105 | SONG developers | 05/31/2008 | Explore |
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| Sequence types and features (SO) |
OBOF | 1.131 | So Administrators | 12/19/2008 | Explore | Description: The Sequence Ontology provides a structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.
Categories : Genomic and Proteomic |
2806 |
| Skin Physiology Ontology (SPO) |
OWL | 2.0 | Tariq Abdulla | 09/18/2008 | Explore |
Categories : Biological Process |
5060 |
| SNP-Ontology (SNPO) |
OWL | 1.4 | Adrien Coulet | 11/21/2008 | Explore | Description: SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels.
Categories : Genomic and Proteomic |
2806 |
| Spatial Ontology (BSPO) |
OBOF | 1.12 | Http://obo Administrators | 12/09/2008 | Explore | Description: A small ontology for anatomical spatiol references, such as dorsal, ventral, axis, and so forth.
Categories : Anatomy |
2810 |
| Spider Ontology (SPD) |
OBOF | 1.8 | Martin Ramirez | 09/25/2008 | Explore | Description: An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).
Categories : Animal Gross Anatomy , Anatomy , Gross Anatomy |
2812 2810 2811 |
| Subcellular anatomy ontology (SAO) |
OWL | See Remote Site | Stephen Larson | 01/06/2009 |
Categories : Other |
2801 | |
| Subcellular Anatomy Ontology (SAO) | OWL | 1.2.5 | Maryann Martone | 09/17/2007 | Explore | Description: SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.
Categories : Anatomy |
2810 |
| Suggested Ontology for Pharmacogenomics (SOPHARM) |
OWL | 2.1 | Adrien Coulet | 11/26/2008 | Explore | Description: SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.
Categories : Genomic and Proteomic |
2806 |
| Systems Biology (SBO) |
OBOF | See Remote Site | Http://www Administrators | 01/06/2009 |
Categories : Chemical |
2802 | |
| Teleost anatomy and development (TAO) |
OBOF | 1.57 | obo-teleost obo-teleost | 12/31/2008 | Explore | Description: A multi-species anatomy ontology for teleost fish.
Categories : Gross Anatomy , Animal Gross Anatomy , Anatomy , Fish Anatomy |
2811 2812 2810 2813 |
| Teleost taxonomy (TTO) |
OBOF | 1.22 | Http://www Administrators | 10/14/2008 | Explore | Description: The Teleost taxonomy ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for our project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant.
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| Tick gross anatomy (TADS) |
OBOF | 1.2 | Http://www Administrators | 07/30/2008 | Explore | Description: The anatomy of the Tick, Families: Ixodidae, Argassidae.
Categories : Gross Anatomy , Anatomy , Animal Gross Anatomy |
2811 2810 2812 |
| Uber anatomy ontology (UBERON) |
OBOF | 1.34 | Http://obo Administrators | 11/27/2008 | Description: Uberon is a multi-species anatomy ontology created to facilitate comparison of phenotypes across multiple species. Uberon is generated semi-automatically from the union of existing species-centric anatomy ontologies.
Categories : Anatomy |
2810 | |
| Units of measurement (UO) |
OBOF | 1.17 | Unit Administrators | 11/13/2008 | Explore | Description: Metrical units for use in conjunction with PATO
Categories : Phenotype |
2807 |
| Xenopus anatomy and development (XAO) |
OBOF | 1.15 | Erik Segerdell | 12/17/2008 | Explore | Description: A structured controlled vocabulary of the anatomy and development of the African clawed frog (Xenopus laevis).
Categories : Animal Gross Anatomy , Gross Anatomy , Anatomy |
2812 2811 2810 |
| Yeast phenotypes (YPO) |
OBOF | 1.9 | Mike Cherry | 12/13/2008 | Explore | Description: A structured controlled vocabulary for the phenotypes of budding yeast.
Categories : Phenotype |
2807 |
| Zebrafish anatomy and development (ZFA) |
OBOF | 1.18 | ZFIN administrators | 11/11/2008 | Explore | Description: A structured controlled vocabulary of the anatomy and development of the Zebrafish (Danio rerio).
Categories : Gross Anatomy , Fish Anatomy , Animal Gross Anatomy , Anatomy |
2811 2813 2812 2810 |
| Latest Notes |
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NCI Thesaurus (Lack of Efficacy) 12/31/08 decorons Need an additional synonym or a PT that relates "lack of efficacy" to its relation to a treatment. |
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NCI Thesaurus (Caloric Intake) 12/31/08 decorons Not sure this is really a property or attribute. Do we need some other heading that would h... |
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NCI Thesaurus (Effect, Appearance) 12/31/08 decorons This needs a better PT. |
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NCI Thesaurus (S-Phase Fraction) 12/31/08 decorons Should this concept (S-Phase Fraction) have a relationship or association to S-Phase? |
| Software type or content
Biomedical Resource Ontology (BRO:Object_Database) 12/01/08 memartone In NIF, we are more interested in the content of the database than the type of database platform.... |
| Latest Mappings |
| Strong (NCI Thesaurus) => tough (Phenotypic quality)
01/01/09 decorons |
| tough (Phenotypic quality) => Strong (NCI Thesaurus)
01/01/09 decorons |
| Tubular (NCI Thesaurus) => cylindrical (Phenotypic quality)
01/01/09 decorons |
| cylindrical (Phenotypic quality) => Tubular (NCI Thesaurus)
01/01/09 decorons |
| Calcified (NCI Thesaurus) => calcified (Phenotypic quality)
01/01/09 decorons |