Past Events

To see current events, click here.

July 9, 2010 - July 10, 2010
Boston, MA

Recognizing the increasing synergy in medical and biological ontology research and development, biomedical Knowledge Representation Working Group (KR-WG) of the American Medical Informatics Association (AMIA) has chosen the Bio-Ontologies SIG as the venue of the KR-WG's biannual knowledge representation in medicine meetings (KR-MED, www.kr-med.org). Bio-Ontologies 2010 will serve as host to KR-MED 2010 in the biannual meeting series. In order to attend the biannual KR-MED meeting, please register for the Bio-Ontology SIG.

June 26, 2010 - June 27, 2010
Stanford University

 

NCBO hosts the W3C workshop on Next Steps for RDF

The Resource Description Framework (RDF), including the general concepts, its semantics, and an XML Serialization (RDF/XML), have been published in 2004. Since then, RDF has become the core architectural block of the Semantic Web, with a significant deployment in terms of tools and applications.

As a result of the R&D activities and the publication of newer standards like SPARQLOWLPOWDER, or SKOS, but also due to the large scale deployment and applications, a number of issues regarding RDF came to the fore. Some of those are related to features that are not present in the current version of RDF but which became necessary in practice (eg, the concept of “Named Graphs”). Others result from the difficulties caused by the design decisions taken in the course of defining the 2004 version of RDF (eg, restrictions whereby literals cannot appear as subjects). Definition of newer standards have also revealed difficulties when applying the semantics of RDF (eg, the exact semantics of blank nodes for RIF and OWL, or the missing connection between URI-s and the RDF resources named by those URI-s for POWDER). New serializations formats (eg, Turtle) have gained a significant support by the community, while the complications in RDF/XML syntax have created some difficulties in practice as well as in the acceptance of RDF by a larger Web community. Finally, at present there is no standard programming API to manage RDF data; the need may arise to define such a standard either in a general, programming language independent way or for some of the important languages (Javascript/ECMAscript, Java, Python,…)

It is therefore time to consider whether a revision of the 2004 version of RDF is necessary or whether the community can continue developing with the current version.

Workshop Goals

The goal of the workshop is to gather feedback from the Web community on whether and, if yes, in which direction RDF should evolve. One of the main issues the Workshop should help deciding is whether it is timely for W3C to start a new RDF Working Group to define and standardize a next version of RDF.

While a new version of RDF may include changes in terms of features, semantics, and serialization syntax(es), backward compatibility is of a paramount importance. Indeed, RDF has been deployed by tools and applications, and the last few years have seen a significant uptake of Semantic Web technologies and publication of billions of triples stemming from public databases (see, eg, the Linked Open Data community). It would be, therefore, detrimental to this evolution if RDF was seen as unstable and if the validity of current application would be jeopardized by a future evolution. As a consequence, with any changes of RDF, backward compatibility requirements should be formalized, along the lines of, say:

  • any valid RDF graphs (in terms of the RDF 2004 version) should stay valid in terms of a new version of RDF; and
  • any RDFS entailment drawn on RDF graphs using the 2004 semantics should be valid entailement in terms of a new version of RDF

The main outcome of the workshop will be the publication of a workshop proceedings and, in case there is a consensus on moving forward, a draft for a charter for a newly created RDF Working Group.

June 21, 2010 - June 22, 2010
San Francisco, CA

Co-located with 2010 Semantic Technology Conference (SemTech 2010)
http://www.semantic-conference.com/

Close to W3C Workshop RDF Next Steps
http://www.w3.org/2009/12/rdf-ws/

The adoption of the W3C OWL Web Ontology Language in real-world applications continues to grow as the research and tools for OWL mature.
The new version OWL 2 -- becoming a W3C recommendation late last year --has been a positive factor in this direction. As the experience in using OWL in different applications and domains increases, the strengths and weaknesses of the language are discovered, resulting in new research and development that further extends its reach.

The OWL: Experiences and Directions (OWLED) workshop series aims at bringing users, implementors and researchers from academia and industry together to describe applications of OWL, to share experience, and to discuss extensions to the language for satisfying application requirements. The workshop will allow the OWL community to set an agenda for research and deployment in order to incorporate OWL-based technologies into new applications.

 

June 21, 2010 - June 25, 2010
San Francisco, California

For further details please click here.

June 15, 2010 - June 16, 2010
Troy, NY

The Third International Provenance and Annotation Workshop (IPAW2010) is part of International Provenance and Annotation Workshop Series (IPAW). It will further investigate the issues of data provenance, process documentation, data derivation, and data annotation.

May 30, 2010 - May 31, 2010
Heraklion, Crete, Greece

The ORES 2010 Workshop is co-located with ESWC 2010 conference in Heraklion, Crete, Greece (May, 30th - June,3rd, 2010). The Extended Semantic Web Conference (EWSC 2010) brings together researchers and practioners dealing with different aspects of semantics on the Web.

 




May 11, 2010
Toronto, Canada

MODULARITY, as studied for many years in software engineering, allows mechanisms for easy and flexible reuse, generalization, structuring, maintenance, design patterns, and comprehension. Applied to ontology engineering, modularity is central not only to reduce the complexity of understanding ontologies, but also to facilitate ontology maintenance and ontology reasoning.

Recent research on ontology modularity shows substantial progress in foundations of modularity, techniques of modularization and modular development, distributed reasoning and empirical evaluation. These results provide a foundation for further research and development.

The workshop follows a series of successful events that have been an excellent venue for practitioners and researchers to discuss latest
work and current problems, and is this time organised as a satellite workshop of FOIS 2010, as well as being co-located with several other relevant events, namely KR, AAMAS, ICAPS, NMR, and DL.

TOPICS include, but are not limited to:

- What is Modularity: Kinds of modules and their properties; modules vs. contexts; design patterns; granularity of representation;

- Logical/Foundational Studies: Conservativity; modular ontology languages (e.g., DDL, E-Connections, P-DL); reconciling
inconsistencies across modules; formal structuring of modules;heterogeneity;

- Algorithmic Approaches: distributed reasoning; modularization and module extraction; (selective) sharing and re-using, linking and
importing; hiding and privacy; evaluation of modularization approaches; complexity of reasoning; reasoners or implemented systems;

- Applications: Semantic Web; Life Sciences; Bio-Ontologies; Natural Language Processing; ontologies of space and time; Ambient
Intelligence; collaborative ontology development; etc.

IMPORTANT DATES

Paper Submission: January 29, 2010
Notification:  March 1, 2010
Camera ready: March 11, 2010
Workshop day: May 11, 2010

March 22, 2010
Stanford, CA
 
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AAAI Spring Symposium on Linked Data Meets Artificial Intelligence
March 22-24, 2010, Stanford, CA
http://www.foaf-project.org/events/linkedai

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The goal of Linked Data is to enable people to share structured data on the Web as easily as they can share documents today. The basic assumption behind Linked Data is that the value and usefulness of data increases the more it is interlinked with other data. Linked Data is simply about using the Web to create typed links between data from different sources. Today, this emerging Web of Data includes data sets as extensive and diverse as DBpedia, Geonames, US Census, EuroStat, MusicBrainz, BBC Programmes, Flickr, DBLP, PubMed, UniProt, FOAF, SIOC, OpenCyc, UMBEL, Virtual Observatories, and Yago.

The availability of this linked data creates a new opportunity for the exploitation of AI techniques that have historically played central role in knowledge representation, information extraction, information integration, and cognitive agents. The symposium is aimed at bringing together the researchers working on Linked Data and AI. Our hope is to create a new community interested in utilizing AI techniques such as ontologies, machine learning, data fusion, etc. in exploring the linked open data. Successful submissions will address at least some aspect of both areas.

 
The symposium will cover topics such as:
   * Light Weight Ontologies for Linked Data
   * Lightweight representation languages for capturing linked data
   * Lightweight ontologies to specify semantics in linked data
   * Conceptual modeling techniques for representing linked data
   * Ontology community evolution and maintenance environments for use with linked data
   * Ontology-enabled environments and tools for Linked Data
 
Semantic Publishing
   * Tools for publishing large data sources using light weight ontologies on the Web (e.g. relational databases, XMrepositories)
   * Curating policies and approaches for linked data
   * Embedding linked data with semantics into classic Web documents (e.g. GRDDL, RDFa, Microformats)
   * Licensing and provenance tracking issues in Linked Data publishing Provenance languages and tools for Linked Data
   * Business models for Linked Data publishing and consumption
 
Exploiting Linked Data
   * User interaction and usability issues surrounding linked data
   * Visualization techniques for exploring linked data
   * Evidence-weighing techniques for socially-grounded claims (FOAF, OpenID)
   * Use of machine learning algorithms for linking and identity resolution
   * Inference and techniques for answering questions using linked data
   * Exploiting rich knowledge bases in conjunction with the linked data

Linked Data Application Architectures
   * Crawling, caching and querying Linked Data on the Web; optimizations, performance
   * Linked Data browsers
   * Linked Data search engines and search interfaces
   * Building intelligent agents that exploit linked data

 
The symposium will feature contributed papers, invited talks, and panels, and will include "self-organized" sessions in the barcamp / un-conference style.

Email contact: linkedai.admin@gmail.com

Keynote: R.V. Guha (Google)

 
Submissions:

We welcome short and long papers, position statements, videos, panel, and demo proposals. Please submit your paper of 2-8 pages in PDF AAAI submission format (http://www.aaai.org/Publications/Author/author.php)
to the Linked Data and AI submission site on Easychair: https://www.easychair.org/login.cgi?conf=linkedai2010

Important Dates
   * October 2, 2009: Submissions due to organizers
   * November 6, 2009: Notification of acceptance sent by organizers
   * January 22, 2010: Accepted camera-ready copy due to AAAI

February 27, 2010
Tokyo, Japan
 
The 3rd Interdisciplinary Ontology Conference will be held on Feburary 27-28, 2010 in Tokyo, Japan, Interdiciplinary Ontology Forum in Japan
 
The increasingly important role played by ontology in addressing the data integration needs of government, science and industry has brought a growing interest in the methods, tools and resources of ontology research and applications. The goal of the Interdisciplinary Ontology Conference of the Japanese Center for Ontological Research (JCOR) is to address the need for an international forum in the ontology domain and to provide a forum for the exchange of ideas and state-of-the-art technologies among researchers from around the world in ontology and related fields.

Disciplines represented will include computer science, logic and philosophy, as well as a variety of application domains. The
conference consists of invited lectures and sessions consisted of peer reviewed papers which will be included in the on-site volume of Proceedings, which will also be distributed as a post-conference publication.

Papers may address a wide variety of issues relating to ontology and its applications. Papers should be at most 12 pages long (including figures and references) employing the Springer LNCS style.
Submission instructions along with registration and logistics information will appear at the conference website 

Interdiciplinary Ontology Forum in Japan

Important Dates:
December 5: Deadline for submission of complete paper
By January 7, 2009: Notification of acceptance
January 28: Camera-ready copy due for on-site proceedings version
February 3, 2010 - February 5, 2010
San Francisco, CA
January 4, 2010
Big Island of Hawaii

The fifteenth Pacific Symposium on Biocomputing, will be held January 4-8, 2010 at the Fairmont Orchid on the Big Island of Hawaii. PSB 2010 is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance.

December 1, 2009
Melbourne, Australia

The 5th Australasian Ontology Workshop (AOW 2009) to be held in Conjunction with the 22nd Australian Joint Conference on Artificial Intelligence (AI'09) on 1 December 2009, and the University of Melbourne, Melbourne, Australia.

http://ksg.meraka.org.za/~aow2009

AOW 2009 is the fifth in a series of workshops on ontologies held in the Australasian region.

The proceedings of the four previous workshops were published as volumes in the Conferences in Research and Practice in
Information Technology (CRPIT) series (http://crpit.com/), and this will again be the case for AOW 2009. As with the previous
workshops, we are investigating the possibility of extended versions of  selected papers appearing in a special issue of a suitable journal.

Papers must be submitted via the EasyChair system at http://www.easychair.org/conferences/?conf=aow2009

Submission information such as format etc. can be found on the CRPIT website: http://crpit.com/AuthorsSubmitting.html. The page limit is 10 pages.

This year AOW 2009 will have a best paper award, with a prize of $250(AUD) being awarded to the author(s) of the best paper.

Important Dates:
Paper submission deadline: 25 September 2009
Notification of acceptance/rejection: 23 October 2009
Camera-ready copies due: 13 November 2009
AOW 2009: 1 December 2009

October 25, 2009
Washington, DC

The 1st Workshop on Ontology Patterns (WOP2009)

provides an arena for proposing and discussing good practices, patterns, pattern-based ontologies, systems etc. The aim is to broaden the pattern community that will develop its own “language” for discussing and describing relevant problems and their solutions. The workshop will be held in conjunction with ISWC2009 on October 25th. It will be a full-day workshop consisting of three parts: papers, posters, and “pattern writing” sessions.

October 18, 2009 - October 20, 2009
Toulouse, France

The 8th Terminology and Artificial Intelligence Conference (TIA 2009), will be held November, 18-20, 2009, in Toulouse, France. The 2009 TIA Conference will focus mainly - although not exclusively - on terms and terminological systems.

September 1, 2009 - September 4, 2009
Redondo Beach, CA

The 5th Intl. Conference on Knowledge Capture (K-CAP 2009), will be held September 1-4, 2009 at the Crowne Plaza Redondo Beach & Marina Hotel, California. K-CAP 2009 will provide a forum that brings together members of disparate research communities that are interested in efficiently capturing knowledge from a variety of sources and in creating representations that can be useful for reasoning, analysis, and other forms of machine processing.

August 31, 2009 - September 4, 2009
Linz, Austria

In conjunction with DEXA 2009 20th International Conference on Database and Expert Systems Applications. Paper Submission deadlines: March 6, 2009

July 27, 2009
Moscone Center, San Francisco, CA

The First International Workshop on Bio-Design Automation (IWBDA) will bring together researchers from the synthetic biology and design automation communities. The broad focus will be on concepts, methodologies and software tools for the automated synthesis of novel biological functions. A specific focus will be on the application of computational expertise from electronic circuit design to these areas. Abstracts submissions due May 22, 2009.

July 24, 2009 - July 26, 2009
Buffalo, New York

To be maximally effective, ontologies must work well together. But as ontologies become more commonly used, the problems involved in achieving coordination in ontology development become ever more urgent. To address these problems there is a need for an overarching conference which brings together representatives of all major communities involved in the development and application of ontologies in biomedicine and related areas. ICBO is designed to meet this need. Please see their website for the Call for Papers. ICBO will be held July 24-26, 2009, in conjunction with four days of tutorials and classes in ontology to be scheduled from July 20-23, 2009. ICBO is co-sponsored by the University at Buffalo College of Arts and Sciences, the National Center for Ontological Research (NCOR), and the NBCO.

July 22, 2009
July 23, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 22, 2009
July 23, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 22, 2009
July 23, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 22, 2009
July 23, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 21, 2009 - July 23, 2009
University of Manchester, UK

DILS 2009 is the sixth in a workshop series that aims at fostering discussion, exchange, and innovation in research and development in the areas of data integration and data management for the life sciences. Paper Submission Deadlines: February 13, 2009 (abstracts); February 20, 2009 (full papers).

July 20, 2009
July 21, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 20, 2009
July 21, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 20, 2009
July 21, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 20, 2009
July 21, 2009
Buffalo, NY, USA

A two-day course organized in conjunction with the International Conference on Biomedical Ontology.

July 11, 2009 - July 17, 2009
Pasadena, California, USA
June 23, 2009 - June 26, 2009
University of Amsterdam, Netherlands

This conference will bring together researchers developing or using

Protégé

methodologies and tools. The conference provides a great opportunity to appreciate the breadth of applications of the technology, to share new developments in the field, and to find out how to leverage these developments in practice.

June 18, 2009
Online

A new membership organization dedicated to the subject of applied ontology has been established. A non-profit, open association with the purpose of promoting interdisciplinary research and international collaboration the International Association for Ontology and its Applications (IAOA) views biomedicine as a strategically important application area. To present the IAOA, which enjoys a the friendly cooperation with the Ontolog Forum, the IAOA Executive Council has organized a public Ontolog telecon for this Thursday, June 18, at 10:30 PDT, 19:30 CEST. See details here.

June 17, 2009
Online
June 3, 2009
online

Please see http://bioontology.stanford.edu/upcomingtalks for more information.

May 20, 2009 - May 21, 2009
Bethesda, Maryland

Aligned closely with the priorities of the new Administration, this year’s conference will focus on the development and widespread implementation of personal electronic health records. For full conference information, and to register, please see this page.

May 6, 2009 - May 7, 2009
Milan, Italy

In conjunction with the 11th International Conference on Enterprise Information Systems (ICEIS 2009). Regular Paper Submission Deadline: March 2, 2009.

April 29, 2009
Stata Center in Cambridge, MA

The Shared Names initiative has as its mission to assign URIs as names for publicly available biomedical information records and establish a community managed shared infrastructure for providing durable access to documentation about these names. The first workshop will take place April 29, 2009 at the Stata Center in Cambridge, MA. For more information, inclluding instructions for registering, please see the Meeting Information Site.

April 15, 2009
online

Please see link for more information.

April 6, 2009 - April 7, 2009
online

Toward Ontology-based Standards: This summit will address the intersection of two active communities, namely the technical standards world, and the community of ontology and semantic technologies. This intersection is long overdue because each has much to offer the other. Ontologies represent the best efforts of the technical community to unambiguously capture the definitions and interrelationships of concepts in a variety of domains. Standards - specifically information standards - are intended to provide unambiguous specifications of information, for the purpose of error-free access and exchange....

March 22, 2009 - March 23, 2009
Saint-Petersburg, Russia Colocated with EDBT/ICDT 2009

Conference Information. This workshop will be a forum for presenting and discussing ideas, challenges, and opportunities for data management technology in the life sciences. New and existing concepts and techniques shall be considered in the light of the rapidly increasing interest in life sciences research and the great advances in system infrastructures and available data sources.

March 18, 2009
online

Please see link for more information.

March 15, 2009 - March 17, 2009
San Francisco, CA

Hosted by: The American Medical Informatics Association in Partnership with ISCB.

March 7, 2009
Buffalo, NY, USA

The deadline for submission of papers to ICBO has been extended to March 7, 2009 (midnight EST). ICBO has received major funding support from the National Human Genome Research Institute (NIH/NHGRI). This will allow for an expanded number of student and early career fellowships at the ICBO conference. Please see their website for the Call for Papers.

March 4, 2009
online

Please see link for more information. - Talk will be rescheduled.

February 27, 2009 - March 1, 2009
Tokyo, Japan

The ontological methodology has been developed in computer science and related fields in recent years and has proven very useful in areas such as biomedical informatics, intelligence analysis, information retrieval, and natural language processing. It also serves as basis for the Semantic Web initiative and for a number of innovative experiments in text- and literature-mining and in journal publishing.

February 18, 2009
online

Please see link for more information.

February 13, 2009
online

The BioPortal User Group aims to improve bi-directional communication between the Center's developers and the user community of Bioportal.

February 4, 2009
online

Please see link for more information.

January 21, 2009
online

Please see the link for more information.

January 5, 2009
Boston, MA, USA

This workshop will be held in conjunction with the Annual Meeting of the Society for Integrative and Comparative Biology (SICB) in Boston, MA on January 5, 2009. It is cosponsored by the National Evolutionary Synthesis Center (NESCent) and the National Center for Biomedical Ontology (NCBO)

December 18, 2008 - December 19, 2008
Stanford University

For more information, please contact Benjamin Dai

December 16, 2008 - December 17, 2008
Stanford University

For more information, please contact Michael Montegut

November 28, 2008
Edinburgh, UK

Overview: The workshop is organized in sessions and open discussions. Invited speakers will present state-of-the-art, provocative lectures on the workshop's main topic, while a number of submissions will be accepted as oral presentations and posters on all workshop's topics.

November 8, 2008 - November 12, 2008
Washington, DC
October 31, 2008 - November 3, 2008
Saarbrücken, Germany

FOIS 2008 is the 5th International Conference on Formal Ontology in Information Systems.

October 26, 2008 - October 30, 2008
Karlsruhe, Germany
September 16, 2008 - September 18, 2008
University at Buffalo, NY
July 19, 2008
Toronto, Canada

This will be held as a tutorial at ISMB 2008.

June 20, 2008
Minneapolis, MN

This will be held as part of Evolution 2008.

April 12, 2008 - April 13, 2008
Buffalo, NY

2-Day Training Event

March 27, 2008 - March 28, 2008
Stanford, CA
March 27, 2008 - March 28, 2008
Newark, NJ
March 24, 2008 - March 26, 2008
Stanford, CA
March 10, 2008 - March 12, 2008
San Francisco, CA

See their brochure for more information.

February 26, 2008 - February 27, 2008
Tokyo, Japan

This event is being scheduled as part of the Inaugural Conference of JCOR: The Japanese Center for Ontological Research.

December 13, 2007 - December 14, 2007
Stanford, CA, USA
November 27, 2007 - November 28, 2007
Stanford, CA, USA
October 25, 2007 - October 28, 2007
Hayes Mansion, San Jose, California
November 30, 2006 - December 2, 2006
Clark Center, Stanford University, Stanford, CA
November 6, 2006 - November 7, 2006
Inn at the Colonnade, Baltimore, MD
September 13, 2006 - September 17, 2006
Hinxton, UK
September 8, 2006 - September 9, 2006
Seattle, WA
August 14, 2006 - August 18, 2006
Stanford University, CA

An educational seminar introducing participants to bio-ontologies, uses, and best practices. Slides are available at http://www.bioontology.org/wiki/images/3/31/CSB2006.ppt.

August 6, 2006 - August 10, 2006
Fortaleza, Brazil
July 23, 2006 - July 26, 2006
Stanford Univeristy, CA
July 17, 2006 - July 19, 2006
NIH, Bethesda, MD