NCBO Past Webinar Series Talks

Accelerating Health Advances through Open Challenges

whetzel — Fri, 18 Jan 2013 20:28:19 +0000

The next NCBO Webinar will be presented by Mike Kellen from Sage Bionetworks on "Accelerating Health Advances through Open Challenges" at 10:00am PDT, Wednesday, May 1. Below is information on how to join the online meeting via WebEx and accompanying teleconference. For the full schedule of the NCBO Webinar presentations see: http://www.bioontology.org/webinar-series.

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Upcoming or Past:

Past

Date:

05/01/2013

Summary:

Mike Kellen, Sage Bionetworks

Genomic annotation, enrichment and prediction of concepts in diverse biomedical ontologies

whetzel — Fri, 18 Jan 2013 20:40:52 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

04/24/2013

Summary:

Sean Mooney, Buck Institute

On the road to production: Semantic integration cases indicate successful adoption to improve knowledge-based decisions in Pharma and healthcare

whetzel — Fri, 16 Nov 2012 05:04:41 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

04/17/2013

Summary:

Erich Gombocz, IO Informatics

Removing roadblocks: leveraging ontologies for data aggregation and computation

whetzel — Fri, 21 Sep 2012 10:52:37 +0000

ABSTRACT:

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Upcoming or Past:

Past

Date:

03/06/2013

Summary:

Melissa Haendel, Oregon Health & Science University

Translating unstructured, crowdsourced content into structured data

whetzel — Thu, 15 Nov 2012 22:53:15 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

02/20/2013

Summary:

Andew Su, The Scripps Research Institute

Biotea, delivering the semantic infrastructure for PubMed Central

whetzel — Fri, 21 Sep 2012 10:50:53 +0000

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ABSTRACT:

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slides:

rdf4pmc-Garcia-NCBOWebinar.pdf

Upcoming or Past:

Past

Date:

02/06/2013

Summary:

Alex Garcia, Florida State University

An Ontologist's Guide to HL7

whetzel — Fri, 16 Nov 2012 04:54:49 +0000

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DOWNLOAD SLIDES

ABSTRACT:

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Upcoming or Past:

Past

Date:

01/16/2013

Summary:

Barry Smith, University at Buffalo

Use of ontologies in veterinary medicine

whetzel — Fri, 21 Sep 2012 10:57:56 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

12/19/2012

Summary:

Suzanne Santamaria, Virginia Tech

Chris Evelo, Maastricht University

whetzel — Fri, 21 Sep 2012 10:55:56 +0000

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SLIDES

ABSTRACT:

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Upcoming or Past:

Past

Date:

12/05/2012

Summary:

Using ontologies to do integrative systems biology

Knowledge Organization System (KOS) for biodiversity information resources, GBIF KOS work program

whetzel — Fri, 21 Sep 2012 10:49:31 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

10/17/2012

Summary:

Dag Endresen, GBIF Norway, Natural History Museum, University of Oslo Éamonn Ó Tuama, Global Biodiversity Information Facility (GBIF)

Editing and Publishing OWL2 and OBO ontologies with WebProtege and BioPortal

whetzel — Fri, 05 Oct 2012 01:05:34 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

10/10/2012

Summary:

Tania Tudorache and Matthew Horridge, Stanford University

Force11: The Future of Research Communications and e-Scholarship: Past, Present, and Inviting Input for the Future

whetzel — Fri, 21 Sep 2012 10:30:10 +0000

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View Slides

ABSTRACT:

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Upcoming or Past:

Past

Date:

10/03/2012

Summary:

Maryann Martone, NIF/UCSD, Executive Director Force11 and Anita de Waard, Disruptive Technologies Director, Elsevier Labs, Force11 Exec Board member

Do Proton Pump Inhibitors increase the risk of Myocardial Infarction? -- insights from mining clinical notes

whetzel — Tue, 11 Sep 2012 14:36:59 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

09/19/2012

Summary:

Nigam Shah, Stanford University

Abstraction networks to support comprehension and auditing for terminologies

whetzel — Tue, 03 Jan 2012 00:17:37 +0000

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slides:

Abstraction Networks for Terminologies-v34.ppt

Upcoming or Past:

Past

Date:

09/12/2012

Summary:

Yehoshua Perl, New Jersey Institute of Technology

Semantic Workflows and Provenance-Aware Software

whetzel — Thu, 07 Jun 2012 16:24:17 +0000

Yolanda Gil, USC/ISI, Wednesday, June 20 at 10:00am PDT

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ABSTRACT:

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Upcoming or Past:

Past

Date:

06/20/2012

Summary:

Yolanda Gil, USC/ISI

Capturing and Computer Reasoning with Quantitative and Semantic Information in Radiology Images

whetzel — Mon, 02 Jan 2012 21:28:47 +0000

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slides:

RubinNCBO.pdf

Upcoming or Past:

Past

Date:

06/06/2012

Summary:

Daniel Rubin, Stanford University

Vaccine Ontology (VO) and its application in literature mining of vaccine-gene interaction networks

whetzel — Thu, 12 Jan 2012 05:57:58 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

05/02/2012

Summary:

Oliver He, University of Michigan

MIRIAM Registry and Identifiers.org - Robust and versatile identification in life sciences

whetzel — Wed, 14 Mar 2012 16:30:59 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

03/21/2012

Summary:

Nicolas Le Novere, EBI

HOM and extending the reach of BioPortal

whetzel — Mon, 27 Feb 2012 17:43:52 +0000

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Upcoming or Past:

Past

Date:

03/07/2012

Summary:

Rob Wynden, UCSF

Formalization of models and simulation results in systems biology

whetzel — Mon, 02 Jan 2012 21:16:08 +0000

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slides:

2012_ncbo_biomodels.pdf

Upcoming or Past:

Past

Date:

02/15/2012

Summary:

Michel Dumontier, Carleton University

Applying ontologies to biomedical data; views, rules and annotation tools

whetzel — Sun, 28 Aug 2011 20:26:15 +0000

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Upcoming or Past:

Past

Date:

02/01/2012

Summary:

Simon Jupp, James Malone and Helen Parkinson, European Bioinformatics Institute

UMLS Concepts and Terms in Clinical Notes: Large-scale Corpus Analysis

whetzel — Wed, 23 Nov 2011 21:55:12 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

12/07/2011

Summary:

Stephen Wu

Informatics and Standards for Nanomedicine Technology

whetzel — Tue, 11 Jan 2011 04:38:32 +0000

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ABSTRACT:

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slides:

Baker_NCBO-Webinar-11-02-2011.ppt

Upcoming or Past:

Past

Date:

11/02/2011

Summary:

Nathan Baker, Pacific Northwest National Laboratory and David Paik, Stanford University

Making Sense of Unstructured Data in Medicine Using Ontologies

whetzel — Sun, 28 Aug 2011 20:14:58 +0000

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ABSTRACT:

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slides:

Nigam_NCBO-Webinar-10.19.2011.ppt

Upcoming or Past:

Past

Date:

10/19/2011

Summary:

Nigam Shah, Stanford University

Automated extraction of domain-specific clinical ontologies

whetzel — Thu, 29 Sep 2011 20:15:48 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

10/05/2011

Summary:

Chimezie Ogbuji, Case Western Research University School of Medicine

Using ontologies for hypothesis generation and their application to basic research in aging

whetzel — Fri, 05 Aug 2011 00:23:12 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

09/21/2011

Summary:

Sean Mooney, The Buck Institute for Research on Aging

Sage Bionetworks Synapse Project

whetzel — Fri, 05 Aug 2011 00:13:19 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

09/07/2011

Summary:

Mike Kellen, Sage Bionetworks

Linking science and semantics with the Annotation Ontology and the SWAN Annotation Tool

whetzel — Tue, 05 Apr 2011 11:27:26 +0000

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ABSTRACT:

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Upcoming or Past:

Past

Date:

06/15/2011

Summary:

Paolo Ciccarese, Mass General Hospital and Harvard Medical School

Biomedical Annotation by Humans and computers in a Keyword-driven world

whetzel — Tue, 11 Jan 2011 04:47:35 +0000

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ABSTRACT:

Demo Player:

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Upcoming or Past:

Past

Date:

06/01/2011

Summary:

Simon Twigger, Medical College of Wisconsin

Abstraction networks to support comprehension and auditing for terminologies

whetzel — Fri, 06 May 2011 14:54:58 +0000

**POSTPONED**

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Upcoming or Past:

Past

Date:

05/18/2011

Summary:

Yehoshua Perl, New Jersey Institute of Technology

Semantic cross-domain integration: The intersection of research, public, and clinical data; creating applicable knowledge for decision support in patient-centric healthcare

whetzel — Tue, 05 Apr 2011 11:23:14 +0000

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ABSTRACT:

Demo Player:

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slides:

NCBO_WebinarSeriens_May4_20110503_EAG_final.pdf

Upcoming or Past:

Past

Date:

05/04/2011

Summary:

Erich Gombocz

The ECGrid Toolkit and the use of data annotation in studies of cardiac hypertrophy and sub-clinical detection of heart disease

whetzel — Tue, 11 Jan 2011 04:44:14 +0000

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Upcoming or Past:

Past

Date:

04/20/2011

Summary:

Rai Winslow, The Johns Hopkins University

Using ontologies in integrative tools for protozoan parasite research

whetzel — Fri, 06 Aug 2010 00:21:20 +0000

ABSTRACT:

Demo Player:

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Upcoming or Past:

Past

Date:

04/06/2011

Summary:

Chris Stoeckert, University of Pennsylvania

Social Computing for Scientists: Building collaborative e-Laboratories

whetzel — Tue, 07 Sep 2010 23:43:48 +0000

WEBEX RECORDING

ABSTRACT:

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slides:

NCBO Webinar 2011.ppt

Upcoming or Past:

Past

Date:

03/16/2011

Summary:

Carole Goble, University of Manchester

Ontology-based annotation of neurodegenerative disease phenotypes using the Neuroscience Information Framework

whetzel — Sun, 06 Feb 2011 10:42:53 +0000

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ABSTRACT:

Demo Player:

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Upcoming or Past:

Past

Date:

02/16/2011

Summary:

Maryann Martone, UCSD

RxNav: Browser and Application Programming Interfaces for Drug Information Sources

whetzel — Mon, 17 Jan 2011 21:41:18 +0000

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ABSTRACT:

Demo Player:

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slides:

RxNav-20110202-NCBO_webinar.pdf

Upcoming or Past:

Past

Date:

02/02/2011

Summary:

Olivier Bodenreider, National Library of Medicine

Making Easy Things Easy and Lowering the Barrier to Entry in caBIG with Semantic Web Technologies

whetzel — Wed, 10 Nov 2010 19:21:59 +0000

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ABSTRACT:

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slides:

NCBO_Webinar_20101201_caBIG_DavidHau.pdf

Upcoming or Past:

Past

Date:

12/01/2010

Summary:

David Hau, NCI Center for Biomedical Informatics and Information Technology

Bringing reason to phenotype diversity, character change, and common descent

whetzel — Tue, 07 Sep 2010 23:41:17 +0000

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ABSTRACT:

Demo Player:

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Upcoming or Past:

Past

Date:

11/17/2010

Summary:

Hilmar Lapp, Duke University

Architecting an OWL based Enterprise Conformance and Compliance Registry at the National Cancer Institute

whetzel — Fri, 06 Aug 2010 00:12:58 +0000

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ABSTRACT:

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slides:

NCI Semantic Infrastructure.ppt

Upcoming or Past:

Past

Date:

11/03/2010

Summary:

Cecil Lynch, UC Davis

The Neighborhood Auditing Tool for the UMLS and its Source Terminologies

whetzel — Tue, 10 Aug 2010 23:02:08 +0000

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ABSTRACT:

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slides:

JamesGellerNeighborhoodAT.ppt

Upcoming or Past:

Past

Date:

10/20/2010

Summary:

James Geller, New Jersey Institute of Technology

The Gene Wiki: Cultivating and mining community intelligence in biology

whetzel — Thu, 05 Aug 2010 23:51:20 +0000

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ABSTRACT:

Demo Player:

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Upcoming or Past:

Past

Date:

10/06/2010

Summary:

Andrew Su and Ben Good, Genomics Institute of the Novartis Research Foundation

Collaborative Patterns in Large-Scale Ontology Development Projects

whetzel — Fri, 13 Aug 2010 22:24:28 +0000

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ABSTRACT:

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slides:

Collaborative Patterns_Falconer_ 091510.pdf

Upcoming or Past:

Past

Date:

09/15/2010

Summary:

Sean Falconer, Stanford University

The Protein Ontology (PRO) and its web resources

bheyer — Mon, 12 Jul 2010 15:14:34 +0000

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slides:

PRONCBO_Arighi_2010.pdf

Upcoming or Past:

Past

Date:

09/01/2010

Summary:

Cecilia Arighi, University of Delaware

Updates on the NCBO Driving Biomedical Project “Ontology-Based Annotation of Biomedical Time-Series Data”

whetzel — Wed, 24 Feb 2010 01:28:50 +0000

WEBEX RECORDING: https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=42938592&rKe...

ABSTRACT:

Demo Player:

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Upcoming or Past:

Past

Date:

07/07/2010

Summary:

Rai Winslow and Stephen Granite, Johns Hopkins University

The Role of Ontologies in Improved Scholarly Communication

whetzel — Wed, 24 Feb 2010 18:37:13 +0000

Philip E. Bourne, PhD

University of California San Diego

TITLE: The Role of Ontologies in Improved Scholarly Communication

WEBEX RECORDING OF PRESENTATION: https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=42403097&rKe...

Demo Player:

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slides:

Ontologies061610.ppt

Upcoming or Past:

Past

Date:

06/16/2010

Summary:

Philip E. Bourne, UCSD

Indexing Nano Medicine Resources with caOBR

whetzel — Wed, 24 Feb 2010 01:27:06 +0000

WEBEX RECORDING: https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=41497617&rKe...

ABSTRACT:

Demo Player:

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slides:

2010-05 NCBO webinar caB2B-caOBR Integration.ppt

Upcoming or Past:

Past

Date:

05/12/2010

Summary:

Nathan Baker, Washington University and David Paik, Stanford University

CDISC SHARE – Pathway into the Future for Standards Development & Delivery

whetzel — Fri, 12 Mar 2010 10:10:49 +0000

WEBEX RECORDING: https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=40967827&rKe...

ABSTRACT:

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slides:

CDISC SHARE_NCBOApril2010.pdf

Upcoming or Past:

Past

Date:

04/21/2010

Summary:

Bron Kisler, CDISC

Developing an Application Ontology for the Sleep Domain

whetzel — Sat, 13 Mar 2010 23:05:00 +0000

LINK TO WEBEX: https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=40644812&rKe...

ABSTRACT:

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slides:

Developing an Application Ontology for Sleep Domain - NCBO Webinar - April 7, 2010.pdf

Upcoming or Past:

Past

Date:

04/07/2010

Summary:

Sivaram Arabandi, Case Western Reserve University

Progress on the ODIE Toolkit

shaunakanel — Wed, 19 Aug 2009 00:11:04 +0000

Rebecca Crowley, MD, MS

University of Pittsburgh School of Medicine

LINK TO WEBEX RECORDING

ABSTRACT:

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slides:

ODIE-Update_030310.ppt

Upcoming or Past:

Past

Date:

03/03/2010

Summary:

Rebecca Crowley, MD, MSIS

Ontology visualization as a service

whetzel — Wed, 18 Nov 2009 17:50:35 +0000

Margaret-Anne Storey, PhD

University of Victoria

LINK TO WEBEX RECORDING: https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=39275602&rKe...

ABSTRACT:

Demo Player:

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slides:

ncbo storey feb 2010.pdf

Upcoming or Past:

Past

Date:

02/17/2010

Summary:

Peggy Storey, University of Victoria

Modeling gene expression sample variables with an application ontology

whetzel — Wed, 18 Nov 2009 17:52:51 +0000

UPDATED WEBEX RECORDING: https://stanfordconference.webex.com/stanfordconference/lsr.php?AT=pb&SP...

Demo Player:

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slides:

NCBO_Seminar_EFO_Atlas-1.ppt

Upcoming or Past:

Past

Date:

02/03/2010

Summary:

James Malone, European Bioinformatics Institute

Semantics and Services Enabled Problem Solving Environment for Trypanosoma cruzi

whetzel — Wed, 18 Nov 2009 17:51:48 +0000

Amit Sheth, Satya Sahoo, Priti Parikh
Kno.e.sis Center, Wright State University

Link to Webinar recording: https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=38508487&rKe...

Abstract:

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slides:

Sheth-NCBO_Webinar_2010.pdf

Upcoming or Past:

Past

Date:

01/20/2010

Summary:

Amit Sheth, Satya Sahoo, Priti Parikh Kno.e.sis Center, Wright State University

UMLS-SKOS: A Semantic Web Framework for Representation of Biomedical Terminological Knowledge using Simple Knowledge Organization System (SKOS)

whetzel — Wed, 18 Nov 2009 17:43:15 +0000

Parsa Mirhaji, MD, PhD

The University of Texas Health Science Center at Houston

Link to WebEx recording of the presentation.

ABSTRACT:

Demo Player:

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slides:

UMLS-SKOS.pdf

Upcoming or Past:

Past

Date:

12/02/2009

Summary:

Parsa Mirhaji, The University of Texas

The use of ontologies within the Neuroscience Information Framework, a neuroscience-centered portal for searching and accessing diverse resources

shaunakanel — Wed, 19 Aug 2009 00:10:02 +0000

Although a plethora of resources (tools, databases, materials) for neuroscientists is now available on the web, finding these resources among the billions of possible web pages continues to be a challenge.

Demo Player:

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slides:

NCBO_Webinar20092.pdf

NCBO_Webinar20092.ppt

Upcoming or Past:

Past

Date:

11/04/2009

Summary:

Maryann Martone, University of California San Diego

Accelerating Candidate Gene Discovery through Ontological Indexing of Large Scale Data Repositories

shaunakanel — Wed, 19 Aug 2009 00:09:17 +0000

Abstract:

Demo Player:

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slides:

2009-10-21-NCBO-Twigger.pdf

2009-10-21-NCBO-Twigger.ppt

Upcoming or Past:

Past

Date:

10/21/2009

Summary:

Simon Twigger, Medical College of Wisconsin

An Ontology-Based Approach for Computational Phenomics: Application to Autism Spectrum Disorder

whetzel — Sun, 04 Oct 2009 03:17:34 +0000

Abstract:

Demo Upload:

2009-10-07-Das.flv

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slides:

2009-10-07-NCBO-Das.pdf

2009-10-07-NCBO-Das.ppt

Upcoming or Past:

Past

Date:

10/07/2009

Summary:

Amar Das, Stanford University

Representing the Immune Epitope Database in OWL

shaunakanel — Thu, 06 Aug 2009 22:15:32 +0000

Bjoern Peters

La Jolla Institute of Allergy and Immunology

Demo Upload:

2009-09-19-Peters.flv

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slides:

2009-06-NCBO-Peters.pdf

2009-06-NCBO-Peters.ppt

Upcoming or Past:

Past

Date:

09/16/2009

Summary:

Bjoern Peters - La Jolla Institute for Allergy & Immunology

Progress Report: Ontology-based Annotation of Biomedical Time–series Data

shaunakanel — Wed, 24 Jun 2009 23:53:10 +0000

Raimond Winslow and Stephen Granite
The Institute for Computational Medicine
Johns Hopkins University

Demo Upload:

Winslow_090209.flv

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slides:

Winslow_090209.pdf

Winslow_090209.ppt

Upcoming or Past:

Past

Date:

09/02/2009

Summary:

Raimond Winslow and Stephen Granite - The Institute for Computational Medicine, Johns Hopkins University

Practical use with major implications: Applied Semantic Knowledgebase (ASK™) for Predictive Biology

shaunakanel — Thu, 25 Jun 2009 00:50:25 +0000

Dr. Erich Gombocz
IO Informatics, Inc.

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Gombocz_080509.flv

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slides:

Gombocz_080509.pdf

Gombocz_080509.ppt

Upcoming or Past:

Past

Date:

08/05/2009

Summary:

Erich Gombocz - IO Informatics

Prototyping a Biomedical Ontology Recommender Service

shaunakanel — Thu, 06 Aug 2009 22:27:00 +0000

Clement Jonquet

NCBO

Demo Upload:

jonquet_071509.flv

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slides:

Presentation-BioOntologies09_Jonquet.pdf

Upcoming or Past:

Past

Date:

07/15/2009

Summary:

Clement Jonquet - National Center for Biomedical Ontology, Stanford University

3R Systems: Implications for knowledge representation and reasoning

shaunakanel — Mon, 29 Jun 2009 23:44:45 +0000

Larry Hunter

University of Colorado Denver

Demo Upload:

Hunter_061709.flv

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slides:

Hunter_061709.pdf

Hunter_061709.ppt

Upcoming or Past:

Past

Date:

06/17/2009

Summary:

Larry Hunter - University of Colorado Denver

Web 2.0 + Web 3.0 = Web 5.0: SADI & CardioSHARE: A New Perspective on Semantic Web Services

Collin — Tue, 16 Jun 2009 20:06:30 +0000

Mark Wilkinson

iCAPTURE Center

Demo Upload:

Wilkinson_061009.flv

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slides:

Wilkinson_061009.pdf

Wilkinson_061009.ppt

Upcoming or Past:

Past

Date:

06/10/2009

Summary:

Mark Wilkinson - iCAPTURE Center

Using Ontologies for Visualizing Design Heterogeneity in Human Studies

Collin — Tue, 16 Jun 2009 20:14:50 +0000

Ida Sim

University of California, San Francisco

Demo Upload:

Sim_060309.flv

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slides:

Sim_060309.pdf

Upcoming or Past:

Past

Date:

06/03/2009

Summary:

Ida Sim - University of California, San Francisco

caOBR: A tool for indexing cancer informatics resources within the NCBO Resource Index

Collin — Tue, 16 Jun 2009 20:13:33 +0000

Nathan Baker

Washington University in St. Louis

Cancer nanotechnology is a new approach in the fight against cancer. Nanoparticle vectors have unique physical properties that allow them to be used for early detection, diagnosis, and therapy in almost every type of cancer. This highly interdisciplinary field draws from areas such as materials science, physics, chemistry, molecular biology, and medicine.

Demo Player:

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slides:

caOBR_052009.ppt

caOBR_052009.pdf

Upcoming or Past:

Past

Date:

05/20/2009

Summary:

Nathan Baker - Washington University in St. Louis

Ontology Views, An Update

Collin — Tue, 16 Jun 2009 20:43:53 +0000

Jim Brinkley

Structural Informatics Group, University of Washington

Demo Upload:

Brinkley_041509.flv

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slides:

Brinkley_041509.ppt

Brinkley_041509.pdf

Upcoming or Past:

Past

Date:

04/15/2009

Summary:

Jim Brinkley - Structural Informatics Group, University of Washington

Precise Biochemical Knowledge Starting with Structure-Based Criteria for Molecular Identity

Collin — Tue, 16 Jun 2009 20:30:18 +0000

Michel Dumontier

Carleton University

Demo Upload:

dumontier_040109.flv

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slides:

dumontier_040109.pdf

dumontier_040109.ppt

Upcoming or Past:

Past

Date:

04/01/2009

Summary:

Michel Dumontier - Carleton University

WikiNeuron: Semantic Wiki of Collective Minds in Neuroscience

Collin — Tue, 16 Jun 2009 20:53:52 +0000

Kei Cheung

Yale Center for Medical Informatics

Recently, there have been an increasing number of bio-Wiki projects including Gene Wiki, WikiProteins, WikiPathways, Proteopedia, SNPedia, etc. To extend the Wiki frontier to the neurosciences, we have created a collaborative and semantically-enabled Wiki prototype called "Wiki Neuron".

Demo Upload:

cheung_031809.flv

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slides:

WikiNeuron_NCBO_Seminar.pdf

WikiNeuron_NCBO_Seminar.ppt

Upcoming or Past:

Past

Date:

03/18/2009

Summary:

Kei Cheung - Yale Center for Medical Informatics

Introducing ODIE 0.5

Collin — Tue, 16 Jun 2009 21:00:17 +0000

Rebecca Crowley

University of Pittsburgh

Demo Upload:

crowley_021809.flv

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slides:

Crowley_021809.pdf

Crowley_021809.ppt

Upcoming or Past:

Past

Date:

02/18/2009

Summary:

Rebecca Crowley - University of Pittsburgh

Infectious Disease Ontology (IDO)

Collin — Tue, 16 Jun 2009 20:56:17 +0000

Lindsay Cowell

Duke University Medical Center

Demo Upload:

cowell_IDO_020409.flv

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slides:

Cowell_IDO.pdf

Cowell_IDO.ppt

Upcoming or Past:

Past

Date:

02/04/2009

Summary:

Lindsay Cowell - Duke University Medical Center

Exploring and Navigating Ontologies through BioPortal

Collin — Tue, 16 Jun 2009 21:00:10 +0000

Margaret-Ann Storey

University of Victoria

Demo Upload:

Storey_012109.flv

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slides:

ncbo_vis_012109_storey.pdf

Upcoming or Past:

Past

Date:

01/21/2009

Summary:

Margaret-Ann Storey - University of Victoria

The Neuroscience Information Framework

Collin — Tue, 16 Jun 2009 21:06:50 +0000

MaryAnn Martone

University of California, San Diego

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slides:

martone_121008.pdf

martone_121008.ppt

Upcoming or Past:

Past

Date:

12/10/2008

Summary:

Maryann Martone - University of California, San Diego

LexGrid - Philosophy, Model and Interfaces: LexGrid Intro and LexBIG/EVS services

Collin — Tue, 16 Jun 2009 21:13:25 +0000

Chris Chute, Tom Johnson, Harold Solbrig

Mayo Clinic

Demo Upload:

mayo_102208.flv

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slides:

20081022_NCBOSeminarSeries_LexGrid_part1.ppt

20081022_NCBOSeminarSeries_LexGrid_part2.ppt

20081022_NCBOSeminarSeries_LexGrid_part1.pdf

20081022_NCBOSeminarSeries_LexGrid_part2.pdf

Upcoming or Past:

Past

Date:

10/22/2008

Summary:

Chris Chute, Tom Johnson, Harold Solbrig - Mayo Clinic

Ontology-Based Annotation of Biomedical Time Series Data

Collin — Tue, 16 Jun 2009 21:51:53 +0000

Raimond Winslow

Institute for Computational Medicine, The Johns Hopkins University

Demo Upload:

winslow_100808.flv

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slides:

winslow_10-8-08.pdf

Upcoming or Past:

Past

Date:

10/08/2008

Summary:

Raimond Winslow - Center for Cardiovascular Bioinformatics and Modeling, Johns Hopkins University

Semantics and Services Enabled Problem Solving Environment for T. Cruzi

Collin — Tue, 16 Jun 2009 21:54:19 +0000

Amit Sheth

Kno.e.sis Center, Wright State University

University of Georgia (CTEGD, LSDIS)

Demo Upload:

Sheth_092408-2.flv

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slides:

Knoesis_NCBO_Seminar-24Sept08.ppt

Upcoming or Past:

Past

Date:

09/24/2008

Summary:

Amit Sheth - Kno.e.sis Center, Wright State University

NCBO Current and Emerging Technologies

Collin — Tue, 16 Jun 2009 21:57:13 +0000

Benjamin Dai

NCBO, Stanford University

With the explosion of information in the biomedical domain, it has become much harder for scientists to access knowledge and experimental data with rapidity and accuracy. The NCBO is currently developing technologies that will advance biology and medicine by enhancing the structured organization of knowledge and improving access to large repositories of biomedical knowledge and data. Benjamin will be presenting:

Demo Upload:

NCBO_Technologies_091008.flv

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slides:

NCBO_Technologies_20080908.pdf

Upcoming or Past:

Past

Date:

09/10/2008

Summary:

Benjamin Dai - NCBO, Stanford University

ICD-11

Collin — Tue, 16 Jun 2009 22:11:13 +0000

Chris Chute

Mayo Clinic

This presentation was delivered April 29th, and repeated June 10th.

Demo Upload:

chrischute6.10.flv

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slides:

NCBO_ICD11_29Apr08.ppt

NCBO_ICD11_29Apr08.pdf

Upcoming or Past:

Past

Date:

06/10/2008

Summary:

Chris Chute - Mayo Clinic

Animal Models: PATO and ZFin

Collin — Tue, 16 Jun 2009 22:14:37 +0000

Demo Upload:

ashburner_westerfield.flv

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slides:

PATO5.08.ppt

ZFIN5.08.pdf

ZFIN5.08.ppt

Upcoming or Past:

Past

Date:

05/27/2008

Summary:

Michael Ashburner & Monte Westerfield

Ontology Views

Collin — Tue, 16 Jun 2009 22:29:53 +0000

Jim Brinkley

Structural Informatics Group, University of Washington

You can find more information on this project's page.

Demo Upload:

Brinkley051308.flv

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slides:

May13_2008.pdf

May13_2008.ppt

Upcoming or Past:

Past

Date:

05/13/2008

Summary:

Jim Brinkley - Structural Informatics Group, University of Washington

ICD-11 (#1)

shaunakanel — Wed, 01 Jul 2009 19:11:56 +0000

Chris Chute

Mayo Clinic

This presentation was delivered April 29th, and repeated June 10th.

Demo Upload:

ChrisChute042908small.flv

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slides:

NCBO_ICD11_29Apr08.pdf

NCBO_ICD11_29Apr08.ppt

Upcoming or Past:

Past

Date:

04/29/2008

Summary:

Chris Chute - Mayo Clinic

BIRNLex & NIF Ontology

Collin — Tue, 16 Jun 2009 22:24:30 +0000

Sorry - No Slides Available

Demo Player:

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Upcoming or Past:

Past

Date:

04/15/2008

Summary:

Bill Bug - University of California, San Diego

The NCBO Open Biomedical Ontology Database (OBD)

Collin — Tue, 16 Jun 2009 22:31:22 +0000

Chris Mungall

Lawrence Berkeley National Labs

Sorry, no slides are available for this talk.
The video is silent.

Demo Upload:

mungall_0308.flv

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Upcoming or Past:

Past

Date:

04/01/2008

Summary:

Chris Mungall - Lawrence Berkeley National Labs

Interactive Views for Navigating Ontologies and Data

Collin — Tue, 16 Jun 2009 22:33:45 +0000

Margaret-Ann Storey

University of Victoria

Demo Player:

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slides:

ncbo_storey.pdf

ncbo_storey.ppt

Upcoming or Past:

Past

Date:

03/04/2008

Summary:

Margaret-Ann Storey - University of Victoria

Open Biomedical Resources

Collin — Tue, 16 Jun 2009 22:37:29 +0000

Nigam Shah

NCBO, Stanford University

Demo Upload:

OBR_012208.flv

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slides:

2008_01_22_NCBO_Seminar_Series_Ontrez_Shah.ppt

2008_01_22_NCBO_Seminar_Series_Ontrez_Shah.pdf

Upcoming or Past:

Past

Date:

01/22/2008

Summary:

Nigam Shah - NCBO, Stanford University

BioPortal Walkthrough

Collin — Tue, 16 Jun 2009 22:37:47 +0000

Benjamin Dai

NCBO, Stanford University

Demo Player:

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slides:

Walkthrough_of_Future_BioPortal_Capabilities.pdf

Upcoming or Past:

Past

Date:

01/08/2008

Summary:

Benjamin Dai - NCBO, Stanford University

ODIE Toolkit

Collin — Tue, 16 Jun 2009 22:41:10 +0000

Rebecca Crowley

University of Pittsburgh

Demo Player:

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slides:

2007-12-18_Rebecca_Crowley_talk_slides.pdf

2007-12-18_Rebecca_Crowley_talk_slides.ppt

Upcoming or Past:

Past

Date:

12/18/2007

Summary:

Rebecca Crowley - University of Pittsburgh

caBIG

Collin — Tue, 16 Jun 2009 22:43:14 +0000

Frank Hartel

Demo Player:

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slides:

2007-10-16_FHartelSlidesFinal.pdf

2007-10-16_FHartelSlidesFinal.ppt

Upcoming or Past:

Past

Date:

10/16/2007

Summary:

Frank Hartel

Phenote

Collin — Tue, 16 Jun 2009 22:52:55 +0000

Use Phenote

Sorry - No Video Available

Demo Player:

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slides:

2007-10-02_SLewis_Phenote_Slides.pdf

2007-10-02_SLewis_Phenote_Slides.ppt

Upcoming or Past:

Past

Date:

10/02/2007

Summary:

Suzanna Lewis - Lawrence Berkeley National Labs

NCBO Past Webinar Series Talks

Accelerating Health Advances through Open Challenges

Genomic annotation, enrichment and prediction of concepts in diverse biomedical ontologies

On the road to production: Semantic integration cases indicate successful adoption to improve knowledge-based decisions in Pharma and healthcare

Removing roadblocks: leveraging ontologies for data aggregation and computation

Translating unstructured, crowdsourced content into structured data

Biotea, delivering the semantic infrastructure for PubMed Central

An Ontologist's Guide to HL7

Use of ontologies in veterinary medicine

Chris Evelo, Maastricht University

Knowledge Organization System (KOS) for biodiversity information resources, GBIF KOS work program

Editing and Publishing OWL2 and OBO ontologies with WebProtege and BioPortal

Force11: The Future of Research Communications and e-Scholarship: Past, Present, and Inviting Input for the Future

Do Proton Pump Inhibitors increase the risk of Myocardial Infarction? -- insights from mining clinical notes

Abstraction networks to support comprehension and auditing for terminologies

Semantic Workflows and Provenance-Aware Software

Capturing and Computer Reasoning with Quantitative and Semantic Information in Radiology Images

Vaccine Ontology (VO) and its application in literature mining of vaccine-gene interaction networks

MIRIAM Registry and Identifiers.org - Robust and versatile identification in life sciences

HOM and extending the reach of BioPortal

Formalization of models and simulation results in systems biology

Applying ontologies to biomedical data; views, rules and annotation tools

UMLS Concepts and Terms in Clinical Notes: Large-scale Corpus Analysis

Informatics and Standards for Nanomedicine Technology

Making Sense of Unstructured Data in Medicine Using Ontologies

Automated extraction of domain-specific clinical ontologies

Using ontologies for hypothesis generation and their application to basic research in aging

Sage Bionetworks Synapse Project

Linking science and semantics with the Annotation Ontology and the SWAN Annotation Tool

Biomedical Annotation by Humans and computers in a Keyword-driven world

Abstraction networks to support comprehension and auditing for terminologies

Semantic cross-domain integration: The intersection of research, public, and clinical data; creating applicable knowledge for decision support in patient-centric healthcare

The ECGrid Toolkit and the use of data annotation in studies of cardiac hypertrophy and sub-clinical detection of heart disease

Using ontologies in integrative tools for protozoan parasite research

Social Computing for Scientists: Building collaborative e-Laboratories

Ontology-based annotation of neurodegenerative disease phenotypes using the Neuroscience Information Framework

RxNav: Browser and Application Programming Interfaces for Drug Information Sources

Making Easy Things Easy and Lowering the Barrier to Entry in caBIG with Semantic Web Technologies

Bringing reason to phenotype diversity, character change, and common descent

Architecting an OWL based Enterprise Conformance and Compliance Registry at the National Cancer Institute

The Neighborhood Auditing Tool for the UMLS and its Source Terminologies

The Gene Wiki: Cultivating and mining community intelligence in biology

Collaborative Patterns in Large-Scale Ontology Development Projects

The Protein Ontology (PRO) and its web resources

Updates on the NCBO Driving Biomedical Project “Ontology-Based Annotation of Biomedical Time-Series Data”

The Role of Ontologies in Improved Scholarly Communication

Philip E. Bourne, PhD

University of California San Diego

Indexing Nano Medicine Resources with caOBR

CDISC SHARE – Pathway into the Future for Standards Development & Delivery

Developing an Application Ontology for the Sleep Domain

Progress on the ODIE Toolkit

Rebecca Crowley, MD, MS

University of Pittsburgh School of Medicine

Ontology visualization as a service

Margaret-Anne Storey, PhD

University of Victoria

Modeling gene expression sample variables with an application ontology

Semantics and Services Enabled Problem Solving Environment for Trypanosoma cruzi

Amit Sheth, Satya Sahoo, Priti Parikh Kno.e.sis Center, Wright State University

UMLS-SKOS: A Semantic Web Framework for Representation of Biomedical Terminological Knowledge using Simple Knowledge Organization System (SKOS)

Parsa Mirhaji, MD, PhD

The University of Texas Health Science Center at Houston

The use of ontologies within the Neuroscience Information Framework, a neuroscience-centered portal for searching and accessing diverse resources

Accelerating Candidate Gene Discovery through Ontological Indexing of Large Scale Data Repositories

An Ontology-Based Approach for Computational Phenomics: Application to Autism Spectrum Disorder

Representing the Immune Epitope Database in OWL

Bjoern Peters

La Jolla Institute of Allergy and Immunology

Progress Report: Ontology-based Annotation of Biomedical Time–series Data

Raimond Winslow and Stephen Granite The Institute for Computational Medicine Johns Hopkins University

Practical use with major implications: Applied Semantic Knowledgebase (ASK™) for Predictive Biology

Dr. Erich Gombocz IO Informatics, Inc.

Prototyping a Biomedical Ontology Recommender Service

Clement Jonquet

NCBO

3R Systems: Implications for knowledge representation and reasoning

Larry Hunter

University of Colorado Denver

Web 2.0 + Web 3.0 = Web 5.0: SADI & CardioSHARE: A New Perspective on Semantic Web Services

Amit Sheth, Satya Sahoo, Priti Parikh
Kno.e.sis Center, Wright State University

Raimond Winslow and Stephen Granite
The Institute for Computational Medicine
Johns Hopkins University

Dr. Erich Gombocz
IO Informatics, Inc.