Meetings and Events

2007-06-11T00:11:25Z

Asidhu: /* Upcoming meetings */

== Upcoming meetings ==

*'''[http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 Dagstuhl Seminar: Ontology Interoperability in Biomedicine]'''
**March 27-30, 2007, Dagstuhl, Germany
**Attending: Barry Smith, Michael Ashburner, Mark Musen, Nigam Shah, Fabian Neuhaus, Suzanna Lewis, Werner Ceusters
**Invitation only

*'''Workshop on Clinical Trial Ontology'''
**May 16-17 2007, venue TBD
**[[Workshop on Clinical Trial Ontology | information about Clinical Trial Ontology workshop]]

*'''Reasoning with Biomedical Ontologies'''
**June 20-23, 2007: Schloss Dagstuhl, Germany
**Attending: Deborah McGuinness, Fabian Neuhaus, Nigam Shah, Barry Smith.

*'''[http://cbms07.biomap.org/ Ontologies for Biomedical Systems II at 20th IEEE CBMS 2007]'''
**June 20-22, 2007, Maribor, Slovenia

*'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences'''
**July 23-27, 2007: Schloss Dagstuhl, Germany
**Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
** Attending: Michael Ashburner
**[http://www.dagstuhl.de/07301 http://www.dagstuhl.de/07301]

*'''All NCBCs Ontology workshop'''
**Fall 2007, with Andreas Califano, Columbia, NY

* '''Phenotype Ontology (Upper Level) workshop'''
**2007?

== Past meetings ==

*'''Phenotype Ontology (Workshop)'''
**December 1-2, 2006, Clark Center, Stanford, CA
**[[PATO_Meeting| PATO meeting agenda]]
**Attending: Suzanna Lewis, Chris Mungall, Mark Gibson, Nicole Washington, Nigam Shah, Fabian Neuhaus, Michael Ashburner, Monte Westerfield

*'''Panel on the Future of HL7'''
**AMIA Anual Symposium
**November 14, 3.30-5.00pm., Washington DC
**http://ontology.buffalo.edu/HL7/panel.htm
**Attending: Barry Smith

*'''Tutorial on Genomics Knowledge Representation for Clinical Trials'''
**AMIA Annual Symposium
**November 12, 2006, Washington DC
**http://ontology.buffalo.edu/06/AMIAWorkshop.htm

*'''Biomedical Ontology in Action'''
**KR-MED 2006
**November 8, 2006, Baltimore
**http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html
**Attending: Werner Ceusters, Barry Smith

*'''Workshop on Ontology of Diseases'''
**In association with FOIS 2006 (Formal Ontology and Information Systems)
**November 6-7, 2006, John Hopkins University, Baltimore
**[[Workshop on Ontology of Diseases | information on the Disease Ontology Workshop]]
**Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, Monte Westerfield

*'''Fall NCBO Project Meeting'''
**Oct. 23-25, 2006, Stanford
** All Hands meeting
** Advisory Comm. & NIH Program & Science officers invited

*'''Workshop on Philosophy of Biology'''
**October 14-15, 2006, Buffalo, NY
**http://ontology.buffalo.edu/06/pob
**Attending: Werner Ceusters, Barry Smith

*'''American Society of Human Genetics'''
**October 9-13, 2006, New Orleans, LA
**[http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml]
**Presentation to find collaborators, also ontology workshop

*'''Genomics Standards Consortium Workshop
**National Institute for Environmental e-Science (NIEeS)
**September 11-13, 2006, Hinxton, UK.
** [http://www.niees.ac.uk/events/egenomics2006/index.shtml http://www.niees.ac.uk/events/egenomics2006/index.shtml]
**Attending: Suzanna Lewis, Michael Ashburner, George Gkoutos

*'''Anatomy Ontology Workshop'''
**September 8-9, 2006, Seattle
**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
**Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield

*'''Tutorial on Standards and Ontologies
**Medical Informatics Europe
**August 27, 2006, Maastricht, Netherlands.
**http://ontology.buffalo.edu/06/MIE_Tutorial.htm
**Attending: Werner Ceusters, Barry Smith

*'''IEEE Computational Systems Bioinformatics, 2006'''
**August 14-18, 2006. Stanford University
**[http://www.lifesciencessociety.org/CSB2006/index.html http://www.lifesciencessociety.org/CSB2006/index.html]
** Attending: Mark Musen (Keynote), rest of Stanford group (tutorial in bioontologies/semantic web)

*'''ISMB, 2006'''
**August 6-10, 2006, Fortaleza, Brazil.
** [http://ismb2006.cbi.cnptia.embrapa.br/ http://ismb2006.cbi.cnptia.embrapa.br/]
** Attending: Michael Ashburner, Suzanna Lewis (Keynote speaker for Bio-ontologies SIG)

*'''In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot'''
**Jul 30- August 4, 2006, Fortaleza, Brazil.
** [http://www.swissprot20.org/ http://www.swissprot20.org/]
** Attending: Michael Ashburner, Suzanna Lewis

*'''Functional Genomics investigation Ontology (FuGO) 2nd Workshop'''
**July 24-28, 2006, Hinxton, UK
**http://fugo.sourceforge.net/news/index.php
**Attending: Barry Smith

*'''9th International Protege Conference'''
**July 23-26, 2006, Stanford, CA
**[http://protege.stanford.edu/conference/2006/ http://protege.stanford.edu/conference/2006/]
** Attending: Chris Callendar, Christopher Chute, Tricia d'Entremont, Chris Mungall, Mark Musen, Natasha Noy, Daniel Rubin, Nigam Shah, Kaustubh Supekar

*'''NCBC All Hands Meeting'''
**July 17-19, 2006, NIH, Bethesda, MD
**Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield
**[http://www.bisti.nih.gov/ahm2006/ http://www.bisti.nih.gov/ahm2006/]
**[http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm Ontology: A Vision for the Future and Its Realization] Dissemination Event
***Organizers: Mark Musen, Barry Smith

* '''Core 1 & 2 Project Meeting'''
** June 27-28, 2006, Berkeley, CA
** Attending: Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute, Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
** Working plan for core 1 & 2 goals

* '''Core 1 & 2 Meeting'''
** June 9, 2006, Berkeley, CA
** Attending: Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)

*'''Training Course in Biomedical Ontologies'''
**[http://ontology.buffalo.edu/06/os2/index.html http://ontology.buffalo.edu/06/os2/index.html]
**May 21-24, 2006, Schloss Dagstuhl, Germany
**Attending: Werner Ceusters, Mark Musen, Barry Smith

*'''NSF/RCN workshop on ontology and phylogeny'''
**May 21-24, St. Louis, MO
**Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield

*'''Phenotype Annotation Meeting'''
**May 17-20, Hinxton, UK
**Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
**[[Agenda PaTO | PATO meeting agenda]]

*'''Fish Evolutionary Biology Working Group Meeting'''
**April 9-11, National Evolutionary Synthesis Center (NESCent), Durham, NC
**Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield

*'''Gene Ontology Workshop'''
**March 31-April 3, 2006, St. Croix
** Attending: Michael Ashburner, Suzanna Lewis, Chris Mungall, Barry Smith

* '''Bio-IT LifeSciences Conference'''
**April 3-6, 2006, Boston, MA'''
**[http://www.lifesciencesexpo.com/live/26/ http://www.lifesciencesexpo.com/live/26/]
** Speaker: Michael Ashburner, Ben Franklin Award Lecture.

*'''Workshop on Ontology of Images'''
**March 24-25, 2006, Stanford, CA
**[http://www.loni.ucla.edu/CCB/ CCB NCBC] and others with biomedical image ontologies
**[Workshop on Ontology of Images | info on Ontology of Images workshop]
** Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar

*'''Immunology Ontology Workshop: NIAID'''
**March 21-22, 2006, Gaitherburg, MD
** Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith

*'''Semantic Technology Conference'''
**March 6-9, 2006, San Jose, CA
** [http://www.semantic-conference.com/ http://www.semantic-conference.com/ ]
** Attending: Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)

*'''NIH NCRR Animal Models workshop'''
**March 6-7, 2006, Bethesda, MD
** Attending: Monte Westerfield

*'''[[Minutes & presentations, March 2-4, 2006 Project meeting|cBio Project Meeting]]'''
**March 2-4, 2006, Stanford, CA
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html http://www.smi.stanford.edu/research/cbio/cbio_meeting.html]
**Entire project, NIH Program & Lead Science officers

*'''BIRN ontology workshop'''
**February 28-March 1, 2006, Stanford, CA
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith

*'''NLM vocabulary collection and distribution meeting'''
**February 27-28, 2006, NLM, Washington, DC
** Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig

*'''NIAID meeting'''
**February, 2006, Washington, DC
**Attending: Mark Musen

*'''cBio Phenotype Annotation tool specification'''
**February 21-23, 2006, Berkeley, CA
** Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)

*'''Mini-Syposium on Semantic Enrichment of Scientific Literature'''
**February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
**Attending: Michael Ashburner (speaker)

*'''cBio OBD specification'''
**February 17, 2006, Berkeley, CA
** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)

*'''FuGO meeting'''
** February 13-15, 2006, Philadelphia, PA
**[http://fugo.sourceforge.net/news/index.php http://fugo.sourceforge.net/news/index.php]
**Attending: Barry Smith

*'''Fourth Semantic Interoperability for E-Government Conference'''
** February 9-10, 2006, MITRE, McLean, VA
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
**Attending: Barry Smith

*'''NIAID BRC3 and Inter Operability Working Group meeting'''
** February 6-7, 2006, Philadelphia, PA
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm]
** Attending: Suzanna Lewis, Barry Smith

*'''PharmGKB and cBiO meeting'''
** January 31, 2006, Stanford, CA
** Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)

*'''Pacific Symposium on Biocomputing, 2006'''
**January 2-6, 2006, Maui, HI
**Michael Ashburner (Keynote)
**[http://psb.stanford.edu/ http://psb.stanford.edu/]

*'''NCBC Meeting'''
**Dec. 15-16, NIH, Bethesda, MD
**Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
**Introducting new NCBCs to each other and NIH staff

*'''Phenotype Annotation Meeting'''
**December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
** Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
** Define requirements of phenotype annotation tools

*'''International Biocurator Meeting'''
**December 8-11, 2005, Asilomar, CA
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
**Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)

*'''National Bioinformatics Network, South Africa'''
**December 2, 2005, University of Cape Town, SA
**Michael Ashburner (Keynote)

*'''Phenotype Ontology Content Workshop'''
**Nov. 19-20, 2005, Cold Spring Harbor, NY
** Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
** [[Media:PhenoAgenda.doc]]

*'''Stanford/Mayo/Berkeley Meetings'''
**Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
** Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam, (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)

*'''Forbes Dewey Meeting'''
**Late October, MIT, Cambridge, MA
**Michael Ashburner, chair
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.

*'''Genome Informatics Meeting'''
**Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
**Suzanna Lewis (organizer, speaker)

*'''Workshop on Bio-Ontologies'''
**October 28, 2005, Buffalo, NY
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf http://ontology.buffalo.edu/05/bio-ontologies.pdf]
**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
**Training session: making ontologies better

*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
**October, 2005, Caxambu, Brazil
**Michael Ashburner (Keynote)

*'''Applied Biosystems Inc., Science Meeting'''
**September, 2005, Asilomar, CA
**Michael Ashburner (Keynote)

*'''MGED8, Bergen'''
**September, 2005
**Michael Ashburner (Keynote)

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Meetings and Events