Meetings and Events

2006-06-23T22:24:54Z

Dmahood: updated list of attendees for NCBC all hands

On the [http://datebook.stanford.edu:88/cBiO_Calendar internal calendar].

== Upcoming meetings ==

* '''Core 1 & 2 Project Meeting'''
** June 27-28, 2006, Berkeley
** Attending: Mark, Daniel, Archana, Lynn, Nigam, Dilvan (Stanford); Suzi, Chris M., Sima, Shu, Nicole (Berkeley); Chris Chute, Jim, Harold (Mayo); Peggy (UVic); Carol? (NIH)
** Working plan for core 1 & 2 goals

*'''NCBC Biomedical Ontology Workshop'''
**Later in 2006
**Other NCBC's

*'''NCBC All Hands Meeting'''
**July 17-19, 2006, Washington, DC
**Attending: Mark, Daniel, Deborah, Nigam, Barry, Fabian, Louis Goldberg, James Buntrock, Monte, Michael, Chris Callendar, Simona Carini, Chris Mungall, Nicole Washington

*'''In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot'''
**Jul 30- August 4, 2006, Fortaleza, Brazil.
** [http://www.swissprot20.org/ http://www.swissprot20.org/]
** Attending: Michael Ashburner, Suzi

*'''ISMB, 2006'''
**August 6-10, 2006. Fortaleza, Brazil.
** [http://ismb2006.cbi.cnptia.embrapa.br/ http://ismb2006.cbi.cnptia.embrapa.br/]
** Attending: Michael, Suzi (Keynote speaker in Bio-ontologies)

*'''IEEE Computational Systems Bioinformatics, 2006'''
*August, 2006. Stanford University
**[http://conferences.computer.org/bioinformatics/ http://conferences.computer.org/bioinformatics/]
** Attending: Mark Musen (Keynote speaker), rest of Stanford group (tutorial in bioontologies/semantic web)

*'''Anatomy Ontology Workshop'''
**September 8-9, 2006, Seattle
**[[Anatomy Ontology Workshop | information on the Anatomy Ontology Workshop]]
**Attending: Michael, Suzi, Monte, Barry, Fabian, Melissa, David

*'''Fall Project Meeting'''
**Tentatively Oct. 23-25, 2006, Stanford
** Advisory Board invited

*'''American Society of Human Genetics'''
**October 9-13, 2006, New Orleans, LA
**Presentation to find collaborators, also ontology workshop

*'''Disease Ontology Workshop'''
**In association with FOIS 2006 (Formal Ontology and Information Systems)
**November 6-8, 2006, John Hopkins University, Baltimore
**[[Workshop on Ontology of Diseases | information on the Disease Ontology Workshop]]
**Attending: Barry, Suzi, Chris, Rex, Monte, Fabian

*'''PATO meeting'''
**November 30-December 1, 2006

----
'''2007'''

*'''Ontology Interoperability in Biomedicine'''
**March 27-30, 2007, Dagstuhl, Germany
**Invitation only

*'''Clinical trial ontology workshop'''
**Mid-May 2007, near FDA

*'''Dagstuhl Seminarium: Ontologies and Text Mining for Life Sciences'''
**July 23-27, 2007: Dagstuhl, Germany
**Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
** Attending: Michael Ashburner
**[http://www.dagstuhl.de/07301 http://www.dagstuhl.de/07301]

*'''Spatial reasoning over ontologies'''
**Fall, 2007

*'''Ontology Training workshops for training workshops'''
**Aug. ??? 2007, Buffalo

*'''NECTAR Clinical Research Ontology Workshop'''
**???, 2007, Bethesda ???

*'''All NCBCs Ontology workshop'''
**???, 2007 with Andreas Califano, Columbia, NY???

* '''Phenotype Ontology (Upper Level) workshop'''
**???

== Past meetings ==

* '''Core 1 & 2 Meeting'''
** June 9, 2006, Berkeley
** Attending: Daniel, Archana, Lynn, Nigam, Dilvan Moreira (Stanford); Suzi, Chris M., Shu, Nicole (Berkeley); Jim, Harold (Mayo); Chris Callendar (UVic)

*'''Training Course in Biomedical Ontologies'''
**[http://ontology.buffalo.edu/06/os2/index.html http://ontology.buffalo.edu/06/os2/index.html]
**May 21-24, 2006, Schloss Dagstuhl, Germany
**Barry

*'''NSF/RCN workshop on ontology and phylogeny'''
**May 21-24, St. Louis
**Attending: Michael, Suzi, Monte

*'''Phenotype Annotation Meeting'''
**May 17-20, Hinxton, UK
**Attending: Monte, Erik, Michael, George, Gillian, Suzi, Chris M., Mark G., Fabian, Nigam
**[[Agenda PaTO]]

*'''Fish Evolutionary Biology Working Group Meeting'''
**April 9-11, National Evolutionary Synthesis Center (NESCent), Durham, NC
**Attending: Monte, Paula, Mark G., Chris M.

*'''Gene Ontology Workshop'''
**March 31-April 3, 2006, St. Croix
** Attending: Barry, Michael, Suzi, Chris M.

* '''Bio-IT LifeSciences Conference'''
**April 3-6, 2006, Boston, MA'''
**[http://www.lifesciencesexpo.com/live/26/ http://www.lifesciencesexpo.com/live/26/]
** Speaker: Michael Ashburner, Ben Franklin Award Lecture.

*'''Biomedical Image Ontology Workshop'''
**March 24-25, 2006, Stanford University
**[http://www.loni.ucla.edu/CCB/ CCB NCBC] and others with biomedical image ontologies
** Attending: Barry, Suzi, Stanford Group

*'''Immunology Ontology Workshop: NIAID'''
**March 21-22, 2006, Gaitherburg, MD
** Attending: Mark (Session chair), Suzi (speaker), Barry

*'''Semantic Technology Conference'''
**March 6-9, 2006, San Jose, California
** [http://www.semantic-conference.com/ http://www.semantic-conference.com/ ]
** Attending: Mark Musen(talk), Deborah McGuinness(keynote, tutorial), Daniel Rubin and Kaustubh Superkar(talk),

*'''NIH NCRR Animal Models workshop'''
**March 6-7, 2006, Bethesda, MD
** Attending: Monte

*'''[[Minutes & presentations, March 2-4, 2006 Project meeting|cBio Project Meeting]]'''
**March 2-4, 2006, Stanford University
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html http://www.smi.stanford.edu/research/cbio/cbio_meeting.html]
**Entire project, NIH Program & Lead Science officers

*'''BIRN ontology workshop'''
**February 28-March 1, 2006, Stanford
** Attending: Carol, Chris C., Suzi, Barry, Stanford group

*'''NLM vocabulary collection and distribution meeting'''
**February 27-28, 2006, NLM, Washington, DC
** Attending: Chris M., Chris C., Harold, Deepak, Jim, Tom

*'''NIAID meeting'''
**February, 2006, DC
**Attending: Mark M.

*'''cBio Phenotype Annotation tool specification'''
**February 21-23, 2006, LBNL
** Attending: Melissa & Sierra (ZFIN), Suzi, Chris M., Mark G., John, Shu (Berkeley)

*'''Mini-Syposium on Semantic Enrichment of Scientific Literature'''
**February 20, 2006 at the European Bioinformatics Institute, Hinxton
**Attending: Michael Ashburner [talk]

*'''cBio OBD specification'''
**February 17, 2006, LBNL
** Attending: Ida & Ben (UCSF), Daniel (Stanford), Suzi, Chris M., Mark G., Sima, Shu (Berkeley)

*'''FuGO meeting'''
** February 13-15, 2006, Penn, Philadelphia, PA
**[http://fugo.sourceforge.net/news/index.php http://fugo.sourceforge.net/news/index.php]
**Attending: Barry

*'''Fourth Semantic Interoperability for E-Government Conference'''
** February 9-10, 2006, MITRE, McLean, VA
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
**Attending: Barry

*'''NIAID BRC3 and Inter Operability Working Group meeting'''
** February 6-7, 2006, Philadelphia, PA
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm]
** Attending: Suzi, Barry

*'''PharmGKB and cBiO meeting'''
** January 31, 2006, Stanford
** Attending: Daniel (Stanford), Suzi & Sima (Berkeley), Teri Klein, Tina Boussard, Mark Woon, Russ Altman (PharmGKB)

*'''Pacific Symposium on Biocomputing, 2006'''
**Maui, HI, January 2-6, 2006
**Michael Ashburner, Keynote.
**[http://psb.stanford.edu/ http://psb.stanford.edu/]

*'''NCBC Meeting'''
**Dec. 15-16, NIH
**Attending: Mark, Suzi, Monte
**Introducting new NCBCs to each other and NIH staff

*'''Phenotype Annotation Meeting'''
**December 11-12, 2005, [http://www.visitasilomar.com/ Asilomar conference center]
** Attending
*** From ZFIN: Monte Westerfield, Erik Segerdell, Melissa Haendel, Paula Mabee
*** From FlyBase: Gillian Millburn
*** From Berkeley: Suzi Lewis, Chris Mungall, Mark Gibson
*** From Victoria: Peggy Storey, Chris Callendar, Sean Falconer
** Define requirements of phenotype annotation tools

*'''International Biocurator Meeting'''
**Asilomar, December 8-11, 2005
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
**Attending: Monte Westerfield (speaker), Chris Mungall (speaker), Sima

*'''National Bioinformatics Network, South Africa'''
**December 2, 2005, University of Cape Town.
**Michael Ashburner, Keynote talk at Official Opening.

*'''Phenotype Ontology Content Workshop'''
**Nov. 19-20, 2005, CSHL
** Attending
*** From cBio: Mark, Nigam, Suzi, Chris, John, Michael, George, Monte, Erik (not Barry)
*** Jonathan Bard, XSPAN
*** Thomas Bittner, Lou Goldberg, Fabian Neuhaus, NCOR
*** Judy Blake, MGD
*** Mike Cherry, Jane Lomax, GO
*** Rex Chisolm, Pascale Gaudet, NuGene project
*** Rachel Drysdale, FlyBase
*** Akhilesh Pandey, OMIM
*** Anne Kwitek, RGD
*** Yves Lussier, SNOMED
** [[Media:PhenoAgenda.doc]]

*'''Stanford/Mayo/Berkeley Meetings'''
**Nov. 21, 10am-3pm, Stanford; Nov. 22, 10am-3pm, Berkeley
** Attending
*** From Stanford: Mark, Daniel, Archana, Lynn, Nigam
*** From Berkeley: Suzi, Chris, Sima, Shu, Nomi
*** From Mayo: Deepak, Harold, Jim
** [[Draft Agenda, Mayo/Berkeley Visit, Monday, Nov 21, 2005]]

*'''Forbes Dewey Meeting'''
**Late October, MIT
**Michael Ashburner, chair
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.

*'''Genome Informatics Meeting'''
**Oct. 28-Nov. 1, CSHL
**Suzi will gave presentation on cBio.
**Birds of a feather sessions, one on ontology.

*'''Workshop on Bio-Ontologies'''
**October 28, 2005, Buffalo, NY
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf http://ontology.buffalo.edu/05/bio-ontologies.pdf]
**Presenting: Suzi, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
**Training session on making ontologies better

*'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology, Caxambu, Brazil'''
**October, 2006
**Michael Ashburner, Keynote.

*'''Applied Biosystems Inc., Science Meeting, Asilomar'''
**September 2005
**Michael Ashburner, Keynote.

*'''MGED8, Bergen'''
**September, 2005
**Michael Ashburner, Keynote

Hotel

2006-01-31T18:18:13Z

Dmahood: Updated room pricing - effective Jan 1, 2006

[http://www.stanford.edu/dept/hds/SLAC/ Recommended Hotel]

Standard room with full-sized bed: $71 +10% occupancy tax

Larger room with queen-sized bed: $87 +10% occupancy tax

Larger room with two full-sized beds: $103 +10% occupancy tax

Participants can book online at [https://webbooking.pegs.com/default.aspx?pcode=SLACG&rateplan=medctr] or by calling 650-926-2800; please mention in comment field:

Group number = #232246
Group name = "Image Ontology Workshop."

[http://www.stanford.edu/dept/hds/chs/general/hotel.html Other Hotels]

[http://www.smi.stanford.edu/directions.html Directions]

NCBO Wiki - User contributions [en]

Meetings and Events

Hotel