NCBO Wiki - User contributions [en]

NPO:Main Page

2009-04-06T09:42:00Z

Sobolevnrm: /* Version 02-04-2009 */

== Release Notes for the NanoParticle Ontology (NPO) ==

=== Version 02-04-2009 ===
# added concept developmental process / code: NPO_992
# added concept anatomical structure formation / code: NPO_993
# added concept cellular process / code: NPO_994
# added concept cell death / code: NPO_995
# added concept programmed cell death / code: NPO_996
# added concept cell adhesion / code: NPO_997
# added concept cell cycle process / code: NPO_998
# added concept cell cycle phase / code: NPO_999
# added concept polynucleotide / code: NPO_1000
# added concept nucleic acid / code: NPO_1001
# added concept deoxyribonucleic acid / code: NPO_1002
# added concept ribonucleic acid / code: NPO_1003
# added concept metabolic process / code: NPO_1004
# added concept biosynthetic process / code: NPO_1005
# added concept biopolymer biosynthetic process / code: NPO_1006
# added concept cellular biopolymer biosynthetic process / code: NPO_1007
# added concept cellular component / code: NPO_1008
# added concept cell / code: NPO_1009
# added concept cellular biosynthetic process / code: NPO_1010
# created necessary and sufficient condition for "Cellular Process": Biological Process and has_participant some Cell
# added concept cellular metabolic process / code: NPO_1011
# added concept cellular biopolymer metabolic process / code: NPO_1012
# added concept biopolymer metabolic process / code: NPO_1013
# added concept DNA metabolic process / codE: NPO_1014
# added concept transcription / code: NPO_1015
# added concept RNA metabolic process / code: NPO_1016
# placed "has_output_participant" as a subclass of "has_participant" [use has_output_participant relation for any biopolymer formed in a process]
# added concept RNA biosynthetic process / code: NPO_1017
# made "tumor necrosis factor biosynthetic process" as a subclass of "cellular biopolymer biosynthetic process"
# change preferred_Name "galium" to "gallium"
# change preferred_Name "carbonate group" to "carbonate ester group"
# change preferred_Name "anhydride group" to "acid anhydride group"
# entered preferred_name for "Epoxide_Compound" (code: NPO_956)
# change preferred_Name "nanostructure" to "nanomaterial"; also change its rdf:iD (code: NPO_199)
# added concept nanostructure / code: NPO_1018
# placed 1-D nanostructure, 2-D nanostructure, 3-D nanostructure, nanobud under nanostructure
# placed "nanooparticle formulation" as subclass of "nanomaterial"

NPO:Main Page

2009-04-06T09:39:46Z

Sobolevnrm:

== Release Notes for the NanoParticle Ontology (NPO) ==

=== Version 02-04-2009 ===
# added concept developmental process / code: NPO_992
# added concept anatomical structure formation / code: NPO_993
# added concept cellular process / code: NPO_994
# added concept cell death / code: NPO_995
# added concept programmed cell death / code: NPO_996
# added concept cell adhesion / code: NPO_997
# added concept cell cycle process / code: NPO_998
# added concept cell cycle phase / code: NPO_999
# added concept polynucleotide / code: NPO_1000
# added concept nucleic acid / code: NPO_1001
# added concept deoxyribonucleic acid / code: NPO_1002
12. added concept ribonucleic acid / code: NPO_1003
13. added concept metabolic process / code: NPO_1004
14. added concept biosynthetic process / code: NPO_1005
15. added concept biopolymer biosynthetic process / code: NPO_1006
16. added concept cellular biopolymer biosynthetic process / code: NPO_1007
17. added concept cellular component / code: NPO_1008
18. added concept cell / code: NPO_1009
19. added concept cellular biosynthetic process / code: NPO_1010
20. Created necessary and sufficient condition for "Cellular Process": Biological Process and has_participant some Cell
21. added concept cellular metabolic process / code: NPO_1011
22. added concept cellular biopolymer metabolic process / code: NPO_1012
23. added concept biopolymer metabolic process / code: NPO_1013
24. added concept DNA metabolic process / codE: NPO_1014
25. added concept transcription / code: NPO_1015
26. added concept RNA metabolic process / code: NPO_1016
27. placed "has_output_participant" as a subclass of "has_participant" [use has_output_participant relation for any biopolymer formed in a process]
28. added concept RNA biosynthetic process / code: NPO_1017
29. made "tumor necrosis factor biosynthetic process" as a subclass of "cellular biopolymer biosynthetic process"
30. change preferred_Name "galium" to "gallium"
31. change preferred_Name "carbonate group" to "carbonate ester group"
32. change preferred_Name "anhydride group" to "acid anhydride group"
33. entered preferred_name for "Epoxide_Compound" (code: NPO_956)
34. change preferred_Name "nanostructure" to "nanomaterial"; also change its rdf:iD (code: NPO_199)
35. added concept nanostructure / code: NPO_1018
36. placed 1-D nanostructure, 2-D nanostructure, 3-D nanostructure, nanobud under nanostructure
37. placed "nanooparticle formulation" as subclass of "nanomaterial"

Main Page

2009-04-04T15:16:18Z

Sobolevnrm: /* Ontology Development Area */

Welcome to the '''NCBO Public WIKI'''. This WIKI provides information about collaborative ontology development efforts, dissemination events conducted by the NCBO and publically shared materials from the NCBO.
Please visit our [http://www.bioontology.org Main Site] for more information and materials.

=== NCBO Links ===
*[http://www.bioontology.org/ NCBO Home page]
*[http://www.bioontology.org/wiki/index.php/NCBO_FAQ NCBO FAQ]
*[http://www.bioontology.org/wiki/index.php/News_Events_Publications NCBO News, Events and Publications]

=== Shared Materials===

*[[Public Requirements Redirect|Public Requirements]]

*[[Shared Materials]]

*[[Evaluation Activities]]

=== NCBC Links ===

*[http://www.bisti.nih.gov/ncbc/ Home page of National Centers for Biomedical Computing]

*[http://wiki.na-mic.org/Wiki/index.php/SDIWG:Software_and_Data_Integration_Working_Group NCBC Software and Data Integration Working Group (SDIWG) and Centers Discussion]

*[http://wiki.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies NCBC Scientific Ontologies Working Group]

=== Ontology Development Area ===

Below are wikis for some of the current OBO ontologies. Each wiki is housed on the bioontologies.org wiki, in its own partition (wikispace) of the main wiki

*[[PATO:Main_Page]] - An ontology of phenotypic qualities

*[[RO:Main_Page]] - OBO Relations ontology

*[[CARO:Main_Page]] - Reference anatomical ontology

*[[CL:Main_Page]] - OBO Cell ontology

*[[SO:Main_Page]] - Sequence Ontology

*[[Disease:Main_Page]] - Disease Ontology, and other ontologies pertaining to diseases and disorders

*[[OCI:Main_Page]] - Ontology of Clinical Investigation

*[[NPO:Main_Page]] - NanoParticle Ontology

Note that each ontology lives in its own wikispace which corresponds to the [[OBO:IDSpace]] of that ontology. Note for wiki editors: all wiki pages that are to be considered local to a particular ontology should be prefixed with that IDSpace.

=== Software Development Area ===

*[[OboInOwl:Main_Page]] - Mapping between OBO and OWL formats
*[[Phenote:Main_Page]] - A Phenotype Annotation Tool using Ontologies
*[http://bioportal.bioontology.org Bioportal:Main_Page] - Main page for accessing Bioportal
*[[NCBO-OOR Development]] - Documentation on how the Open Ontology Repository community can customize and advance BioPortal capabilities.
*[[Processing_OBR_Resources]] - Notes on resources being processed

=== NCBO Web services ===

* [[BioPortal REST services]] - Documentation on how to use BioPortal functionality as Web services
* [[UMLS_REST_Services]] - Documentation on how to use our prototype UMLS services (NetKernel)
* [[Annotator Web service]] - Documentation & information about the NCBO Annotator
* [[Resources index Web services]] - Documentation & information about the annotation-based NCBO resources index