https://www.bioontology.org//mediawiki/api.php?action=feedcontributions&user=Anneelissa&feedformat=atomNCBO Wiki - User contributions [en]2024-03-28T08:41:34ZUser contributionsMediaWiki 1.35.9https://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5988Infectious Disease Ontology2007-09-11T00:44:07Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* Common Errors in OWL: http://www.co-ode.org/resources/papers/CommonErrorsInOWL.pdf<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* A reference ontology for bioinformatics: the Foundational Model of Anatomy: http://sigpubs.biostr.washington.edu/archive/00000135/01/jbi-fma.pdf:<br />
* Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html <br />
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
* The Protege developers have created a short, helpful guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html <br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5987Infectious Disease Ontology2007-09-11T00:43:21Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* Common Errors in OWL: http://www.co-ode.org/resources/papers/CommonErrorsInOWL.pdf<br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
* A reference ontology for bioinformatics: the Foundational Model of Anatomy: http://sigpubs.biostr.washington.edu/archive/00000135/01/jbi-fma.pdf:<br />
* Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html <br />
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
* The Protege developers have created a short, helpful guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html <br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5986Infectious Disease Ontology2007-09-11T00:40:07Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
* A reference ontology for bioinformatics: the Foundational Model of Anatomy: http://sigpubs.biostr.washington.edu/archive/00000135/01/jbi-fma.pdf:<br />
* Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html <br />
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
* The Protege developers have created a short, helpful guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html <br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5985Infectious Disease Ontology2007-09-11T00:39:26Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
* A reference ontology for bioinformatics: the Foundational Model of Anatomy: http://sigpubs.biostr.washington.edu/archive/00000135/01/jbi-fma.pdf:<br />
* Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html <br />
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
* The Protege developers have created a very helpful, short guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html <br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5984Infectious Disease Ontology2007-09-11T00:37:12Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
* A reference ontology for bioinformatics: the Foundational Model of Anatomy: http://sigpubs.biostr.washington.edu/archive/00000135/01/jbi-fma.pdf:<br />
* Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
* The Protege developers have created a very helpful, short guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html <br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5983Infectious Disease Ontology2007-09-11T00:33:16Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
* Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
* The Protege developers have created a very helpful, short guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html <br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5982Infectious Disease Ontology2007-09-11T00:29:15Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
* The Protege developers have created a very helpful, short guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html <br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5977Infectious Disease Ontology2007-09-09T21:40:14Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically <br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5976Infectious Disease Ontology2007-09-09T21:37:54Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
<br />
'''Downloads'''<br />
* Download Protege OWL: http://protege.stanford.edu/download/download.html<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5975Infectious Disease Ontology2007-09-09T21:35:44Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
<br />
'''Downloads'''<br />
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5974Infectious Disease Ontology2007-09-09T21:35:17Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
<br />
'''Downloads'''<br />
Download Pellet (a reasoner for OWL): http://pellet.owldl.com/<br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5973Infectious Disease Ontology2007-09-09T21:20:27Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* [[Relations_in_Biomedical_Ontologies.pdf]]: Introduction to the Relations Ontology, describes the formulation of logic-based relations for OBO foundry ontologies<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=File:Relations_in_Biomedical_Ontologies.pdf&diff=5972File:Relations in Biomedical Ontologies.pdf2007-09-09T21:18:36Z<p>Anneelissa: </p>
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<div></div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5971Infectious Disease Ontology2007-09-09T21:15:45Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]: explanation of the necessity of logic-based relations for automatic reasoning over ontologies<br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology&diff=5970Infectious Disease Ontology2007-09-09T21:14:47Z<p>Anneelissa: </p>
<hr />
<div>'''News'''<br />
<br />
The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed [http://meetings.cshl.edu/courses/Workshop%20Curriculum.html here].<br />
<br />
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.<br />
<br />
''Recommended Background Reading''<br />
* [[Relations_in_anatomical_ontologies_sa.pdf]]<br />
<br />
'''Meetings'''<br />
<br />
September 19-20, 2007<br />
* [http://meetings.cshl.edu/courses/c-ontol07.shtml Training Workshop on Infectious Disease Ontology]<br />
<br />
September 21, 2007<br />
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]<br />
<br />
'''Links'''<br />
<br />
* [http://obofoundry.org The OBO Foundry]</div>Anneelissahttps://www.bioontology.org//mediawiki/index.php?title=File:Relations_in_anatomical_ontologies_sa.pdf&diff=5968File:Relations in anatomical ontologies sa.pdf2007-09-09T20:57:35Z<p>Anneelissa: A guide to the necessity and formulation of ontological relations</p>
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<div>A guide to the necessity and formulation of ontological relations</div>Anneelissa