https://www.bioontology.org//mediawiki/api.php?action=feedcontributions&user=Phismith&feedformat=atomNCBO Wiki - User contributions [en]2024-03-19T01:26:45ZUser contributionsMediaWiki 1.35.9https://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12977Meetings and Events2018-10-19T19:59:36Z<p>Phismith: </p>
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<div>== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==<br />
<br />
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 2015<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Workshop_on_Ontology_of_Images&diff=12968Workshop on Ontology of Images2018-03-02T02:32:21Z<p>Phismith: </p>
<hr />
<div>[[Presentations|Imaging Workshop Slides]]<br />
<br />
[[#Some Relevant Links|Some Relevant Links]] <br />
<br />
== Background ==<br />
<br />
The [https://www.bioontology.org/ National Center for Biomedical Ontology] will host a two-day workshop focused on the ontology of (biomedical) images and imaging. The workshop will take place on March 24-25, 2006 in Room M-112 of the [http://lane.stanford.edu/about/directions.html Lane Medical Library] in Stanford. <br />
<br />
The goal of the workshop is to promote interoperability of biomedical image and imaging ontologies through the application of principles of sound ontology construction and through the coordination of current ontology development efforts in the imaging domain. One subsidiary goal is to ensure compatibility of image ontologies with ontologies of those biomedical entities which images represent. The workshop will include hands-on experiments directed towards building a biomedical image ontology on the basis of sample ontologies submitted by participants in advance.<br />
<br />
The following topics will be addressed:<br />
<br />
- coordination and integration of ontologies in the imaging domain<br />
<br />
- ontologies for classification of images, image features, interpretations, <br />
<br />
- the role of a reference ontology such as the [http://sig.biostr.washington.edu/projects/fm/AboutFM.html FMA] <br />
<br />
- the use of common relations (along the lines advanced in the [http://genomebiology.com/2005/6/5/R46 OBO Relation Ontology]), including relations among images, features, interpretations, and the underlying reality<br />
<br />
- use of ontologies in reasoning<br />
<br />
- building an ontology of imaging tools and data, including issues related to the classification of imaging algorithms and to the potential uses of a tools ontology in supporting interoperability of bioinformatics software (in conjunction with the [http://na-mic.org/Wiki/index.php/SDIWG:Software_and_Data_Integration_Working_Group Software and Data Integration Working Group] of the NIH Roadmap National Centers for Biomedical Computing).<br />
<br />
The workshop is designed to be of value to all those involved in biocomputing in the imaging domain, including representatives of those NCBCs who use or develop imaging technologies. <br />
<br />
This workshop was funded by the United States National Institutes of Health (NIH) through the NIH Roadmap for Medical Research, Grant 1 U 54 HG004028. Information on the National Centers for Biomedical Computing can be found at [http://nihroadmap.nih.gov/bioinformatics http://nihroadmap.nih.gov/bioinformatics]. Additional support has been provided by GlaxoSmithKline (GSK), Language & Computing (L&C) and Agfa.<br />
<br />
== Workgroups and Mailing List ==<br />
<br />
At the conclusion of the workshop, many participants expressed interest in continuing the discussions and undertaking the work related to imaging ontology. A mailing list for these discussions was set up (https://www.neuroinformatics.org/mailman/listinfo/image-ontology)<br />
<br />
In addition, a Wiki to host materials related to a working group in imaging ontology was created (http://www.neuroinformatics.org:8080/xwiki/bin/view/ImageOntology/Main). Please visit this Wiki to obtain current information on the projects and activities related to these efforts.<br />
<br />
== Agenda ==<br />
<br />
(See [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast] for videos of all sessions.)<br />
<br />
'''Session I: How to Build an Ontology''' Barry Smith (Moderator) <br />
<br />
9:00am Introduction <br />
<br />
-- What this Meeting is For <br />
<br />
-- Basic Principles of Ontology Design <br />
<br />
-- The OBO Foundry Project <br />
<br />
-- The OBO Relation Ontology <br />
<br />
10:30am Coffee <br />
<br />
11:00am Towards an Ontology for the Imaging Domain <br />
<br />
-- BIRNLex and RadLex Case Studies <br />
<br />
12:15pm Kaustubh Supekar: An Overview of the Groups Represented at this Meeting <br />
<br />
12:30pm Lunch <br />
<br />
'''Session II: Imaging Terms and Relations''' <br />
Daniel Rubin (Moderator) <br />
<br />
1:30pm Participant self-introductions <br />
<br />
2:00pm Ontologies and Terminologies in Radiology and Biological Imaging <br />
<br />
-- Curt Langlotz: RadLex <br />
<br />
-- Maryann Martone: BIRNLex <br />
<br />
-- Anand Kumar: DICOM <br />
<br />
3:30pm Coffee <br />
<br />
4:00pm Relations and Reasoning in Image Ontologies <br />
<br />
-- Dirk Marwede: Relations in Image Ontologies and Anatomy Ontologies <br />
<br />
-- Mariana Casella dos Santos: Bootstrapping an Image Ontology <br />
<br />
-- Helen Chen: Building Real-World Applications and Reasoning in Radiology <br />
<br />
'''Session III: Image Ontologies''' <br />
Suzanna Lewis (Moderatrix) <br />
<br />
9:00am Examples <br />
<br />
-- Matthew Fielding: From RadLex to RadiO <br />
<br />
-- C. Forbes Dewey: Experibase <br />
<br />
10:30am Coffee <br />
<br />
11:00am Reasoning with Image Ontologies <br />
<br />
-- W. Lorensen: Engineering Beyond Pixels <br />
<br />
-- William Bug: BIRN's Image Ontology Requirements <br />
<br />
-- Louis Goldberg: On Reasoning with Images <br />
<br />
12:30pm Lunch <br />
<br />
'''Session IV: Imaging Tools and Data''' <br />
Ivo Dinov and Barry Smith (Moderators) <br />
<br />
1:30pm Towards an Ontology of Imaging Tools and Data <br />
<br />
-- David Kennedy: The Internet Analysis Tools Registry <br />
<br />
-- Barry Smith: What Should an Ontology of Tools and Data Look Like? <br />
<br />
-- Ontology vs. Yellow Pages: Concluding Debate between Ivo Dinov, Peter Lyster, Suzanna Lewis and Bill Lorensen<br />
<br />
3:30pm Coffee <br />
<br />
-- Strategy Session: How to Build an Image Ontology<br />
<br />
== Participants ==<br />
<br />
Yasser alSafadi (Philips Research)<br />
<br />
Carol Bean (NCRR)<br />
<br />
Bruce Bray (Utah) <br />
<br />
William Bug (BIRN)<br />
<br />
James A Butler (GlaxoSmithKline)<br />
<br />
David Channin (NMH)<br />
<br />
Helen Chen (Agfa)<br />
<br />
Beverly Collins (Radlex) <br />
<br />
Sherri de Coronado (NCI)<br />
<br />
C. Forbes Dewey (MIT)<br />
<br />
Ivo Dinov (UCLA)<br />
<br />
Keith Dreyer (Harvard)<br />
<br />
Matthew Fielding (IFOMIS)<br />
<br />
Daniel Gardner (Cornell)<br />
<br />
Christine Golbreich (Rennes)<br />
<br />
Louis Goldberg (Buffalo)<br />
<br />
Jeff Grethe (BIRN)<br />
<br />
Ammar Halawa (FujiFilm Medical Systems)<br />
<br />
Donald Harrington (NIBIB)<br />
<br />
David Hellman (L&C) <br />
<br />
Peter Hunter (Aukland)<br />
<br />
David Kennedy (Harvard)<br />
<br />
Richard I. Kitney (Imperial College, London)<br />
<br />
Anand Kumar (IFOMIS)<br />
<br />
Curtis Langlotz (University of Pennsylvania)<br />
<br />
Suzanna Lewis (Berkeley)<br />
<br />
William Lorensen (General Electric)<br />
<br />
Peter F. Lyster (NIH/NIGMS)<br />
<br />
Maryann Martone (BIRN)<br />
<br />
Dirk Marwede (IFOMIS / Department of Radiology, University of Leipzig)<br />
<br />
Jose L. Mejino, Jr. (Foundational Model of Anatomy)<br />
<br />
John Michon (Duke)<br />
<br />
Chris Mungall (Berkeley)<br />
<br />
Robert Murphy (CMU)<br />
<br />
Mark Musen (Stanford)<br />
<br />
Dianne Reeves (NCI)<br />
<br />
Jens Rittscher (GE)<br />
<br />
Daniel Rubin (Stanford)<br />
<br />
Mariana Casella Dos Santos (L&C, Belgium)<br />
<br />
Nigam Shah (Stanford)<br />
<br />
Ken Shastri (FujiMed)<br />
<br />
Barry Smith (Buffalo)<br />
<br />
Kaushtubh Supekar (Stanford)<br />
<br />
== Webcast ==<br />
<br />
Session I<br />
Barry Smith (Moderator)<br />
<br />
'''How to Build an Ontology''' <br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-09.ram<br />
<br />
'''Towards an Ontology for the Imaging Domain'''<br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-11.ram<br />
<br />
<br />
Session II <br />
Daniel Rubin (Moderator)<br />
<br />
'''Imaging Terms and Relations''' <br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-1330.ram<br />
<br />
'''Relations and Reasoning in Image Ontologies'''<br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-1600.ram<br />
<br />
<br />
Session III <br />
Suzanna Lewis (Moderatrix)<br />
<br />
'''Image Ontologies''' <br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-25-2006-09.ram<br />
<br />
'''Reasoning with Image Ontologies'''<br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-25-2006-11.ram<br />
<br />
<br />
Session IV <br />
Ivo Dinov and Barry Smith (Moderators)<br />
<br />
'''Imaging Tools and Data''' <br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-25-2006-1330.ram<br />
<br />
'''Ontology vs. Yellow Pages'''<br />
<br />
http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-25-2006-1600.ram<br />
<br />
== Some Relevant Links ==<br />
<br />
[http://genomebiology.com/2005/6/5/R47 The Open Microscopy Environment (OME) Data Model]<br />
<br />
[http://obo.sourceforge.net/cgi-bin/detail.cgi?image OBO Biological Imaging Methods]<br />
<br />
[http://www.rsna.org/Radlex/index.cfm RadLex: A Lexicon for Uniform Indexing and Retrieval of Radiology Information Resources]<br />
<br />
[http://medical.nema.org/ DICOM]<br />
<br />
[http://nifti.nimh.nih.gov/ Neuroimaging Informatics Technology Initiative]<br />
<br />
[http://www.dclunie.com/ David Clunie's Medical Image Format Site]<br />
<br />
[http://www.library.uthscsa.edu/internet/ImageDatabases.cfm Medical Image Databases]<br />
<br />
[http://www.pathbase.net/Pathbase/ Mutant Mouse Images]<br />
<br />
[http://sig.biostr.washington.edu/projects/fm/AboutFM.html Foundational Model of Anatomy]<br />
<br />
[http://www.structuredreporting.com/ Structured Reporting]<br />
<br />
[http://murphylab.web.cmu.edu/services/ Murphy Lab Image Services]<br />
<br />
[https://cabig.nci.nih.gov/workspaces/Imaging In Vivo Imaging]<br />
<br />
[http://www.cl.cam.ac.uk/%7Eafb21/publications/TwD98.html A Taxonomy of Diagram Taxonomies]<br />
<br />
[http://www.bioimage.org/ Bioimage Database]<br />
<br />
[http://www.brainmap.org/ BrainMap:A Functional Neuroimaging Database]<br />
<br />
<br />
== Tool Registries ==<br />
<br />
[http://www.cma.mgh.harvard.edu/iatr/ Registry of Image Analysis Tools]<br />
<br />
[http://www.brc-central.org/tdb/prok_manatee/brc-central/software.shtml BRC Central Bioinformatics Resource Center]<br />
<br />
<br />
----<br />
<br />
[[Hotel]]<br />
<br />
[[Venue]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12744Dissemination Wiki2015-08-08T16:53:21Z<p>Phismith: /* Events */</p>
<hr />
<div>== Events ==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005 to 2015]]'''<br />
<br />
*'''[http://www.bioontology.org/webinar-series Webinar presentations and recordings]<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12743Dissemination Wiki2015-08-08T16:52:55Z<p>Phismith: </p>
<hr />
<div>== Events ==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
*'''[http://www.bioontology.org/webinar-series Webinar presentations and recordings]<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Ontology_Training:_Video_and_Audio_Presentations&diff=12742Ontology Training: Video and Audio Presentations2015-08-08T16:39:47Z<p>Phismith: /* Barry Smith */</p>
<hr />
<div>== '''[http://icbo.buffalo.edu ICBO]''' ==<br />
<br />
Video and audio training material from the 2009 International Conference on Biomedical Ontology is available [http://www.bioontology.org/wiki/index.php/Tutorials_and_Classes here]<br />
<br />
Videos of all presentations and discussions at the 2011 International Conference on Biomedical Ontology are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
<br />
== '''[http://bmir.stanford.edu/people/view.php/mark_a_musen/ Mark Musen]''' ==<br />
<br />
*If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies (Ontolog Form, December 6, 2007)<br />
::[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2007_12_06 Details] [http://ontolog.cim3.net/file/resource/presentation/MarkMusen_20071206/NCBO--MarkMusen_20071206.pdf Slides] [http://ontolog.cim3.net/file/resource/presentation/MarkMusen_20071206/NCBO-BioPortal--MarkMusen_Ontolog-AudioRecording_conf-133566_20071206.mp3 Audio]<br />
<br />
== '''[http://ontology.buffalo.edu/smith Barry Smith]''' ==<br />
<br />
*[http://ncorwiki.buffalo.edu/index.php/Basic_Formal_Ontology_2.0 Basic Formal Ontology 2.0] (2015)<br />
<br />
*[https://youtu.be/18php_34s-M The Emotion Ontology] (2015)<br />
<br />
*[https://youtu.be/PBKsupBquok About Aboutness] (2015)<br />
<br />
*[https://www.youtube.com/watch?v=9zJZiFY-ZrE Metaphysics After Darwin] (2015)<br />
<br />
*[https://www.youtube.com/watch?v=3U55vU8SfEo How to Build an Imaging Ontology] (2015)<br />
<br />
*[https://www.youtube.com/watch?v=b4kULamlFaM&feature=youtu.be The Ontology of Disease] (2014)<br />
<br />
*[https://www.youtube.com/watch?v=3Vw3R5UCcDI Mind, Language and Emotions] (2014)<br />
<br />
*[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity] (May 16-18, 2012)<br />
<br />
*[http://libweb1.lib.buffalo.edu/video/training/DataDayPart1.asp "Ontologies: What Librarians Need to Know"]. Smith presentation starts at 89 minutes. (November 14, 2011)<br />
<br />
*An 8-unit Introduction to Ontology in [http://ontology.buffalo.edu/smith/IntroOntology_Course.html streaming video] format (October 10-11, 2009)<br />
<br />
*Introduction to Biomedical Ontologies. An 8-unit training course in [http://ontology.buffalo.edu/smith/BioOntology_Course.html streaming video] format (April 12-13, 2008)<br />
<br />
*From Basic Formal Ontology to the Information Artifact Ontology. A two-day tutorial given in conjunction with the International Conference on Biomedical Ontology, Buffalo, NY, July 25-26, 2009, available in streaming video format:<br />
::* Barry Smith: Introduction to Basic Formal Ontology. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc1UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc2UB.wmv Part 2]<br />
::* Werner Ceusters: Introduction to Referent Tracking. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc3UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc4UB.wmv Part 2]<br />
::* Alan Ruttenberg: Introduction to the Ontology for Biomedical Investigations (OBI) and the Information Artifact Ontology. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc5UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc6UB.wmv Part 2]<br />
::* Discussion session. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc7UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc8UB.wmv Part 2] <br />
<br />
*Ontology Evaluation in Biomedicine: The OBO Foundry (Ontolog Forum, December 21, 2006)<br />
::[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2005_10_13 Details] [http://ontolog.cim3.net/file/work/OntologyMeasurementEvaluation/2006-12-21_OntologyEvaluationInBiomedicine/OBO-Foundry--BarrySmith_20061221.ppt Slides] [http://obofoundry.org/OntologDec06.mp3 Audio]<br />
<br />
*How to Build an Ontology (Tutorial, Stanford University, October 25, 2006)<br />
::[http://stream.buffalo.edu/shared/research/phismith/Stanford10-25-06/Tutorial.rm Realplayer]<br />
::[http://stream.buffalo.edu/shared/research/phismith/Stanford10-25-06/Tutorial.WMV Windows Mediaplayer] <br />
<br />
*Presentations at the Workshop on [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images] {Stanford University, March 24-25, 2006)<br />
::[http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-09.ram Basic Principles]<br />
::[http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-11.ram Towards an Ontology for the Imaging Domain]<br />
<br />
*The HL7 Reference Information Model<br />
::Presentation at the Regenstrief Institute, Indianapolis, November 9, 2005 (right click to save target: [http://stream.buffalo.edu/shared/research/phismith/regenstrief.mpg])<br />
<br />
== '''NCBO Dissemination Workshops in Biomedical Ontology''' ==<br />
<br />
*The Ontology of Images: March 24-25, 2006 in Stanford, CA.<br />
::[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
*The Ontology of Diseases: November 6-7, 2006 in Baltimore, MD. <br />
::[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases#Agenda Slides and Audio Presentations]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Ontology_Training:_Video_and_Audio_Presentations&diff=12741Ontology Training: Video and Audio Presentations2015-08-08T16:39:12Z<p>Phismith: /* Barry Smith */</p>
<hr />
<div>== '''[http://icbo.buffalo.edu ICBO]''' ==<br />
<br />
Video and audio training material from the 2009 International Conference on Biomedical Ontology is available [http://www.bioontology.org/wiki/index.php/Tutorials_and_Classes here]<br />
<br />
Videos of all presentations and discussions at the 2011 International Conference on Biomedical Ontology are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
<br />
== '''[http://bmir.stanford.edu/people/view.php/mark_a_musen/ Mark Musen]''' ==<br />
<br />
*If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies (Ontolog Form, December 6, 2007)<br />
::[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2007_12_06 Details] [http://ontolog.cim3.net/file/resource/presentation/MarkMusen_20071206/NCBO--MarkMusen_20071206.pdf Slides] [http://ontolog.cim3.net/file/resource/presentation/MarkMusen_20071206/NCBO-BioPortal--MarkMusen_Ontolog-AudioRecording_conf-133566_20071206.mp3 Audio]<br />
<br />
== '''[http://ontology.buffalo.edu/smith Barry Smith]''' ==<br />
<br />
*[http://ncorwiki.buffalo.edu/index.php/Basic_Formal_Ontology_2.0 Basic Formal Ontology 2.0] (2015)<br />
<br />
*[https://youtu.be/18php_34s-M The Emotion Ontology] (2015)<br />
<br />
*[https://youtu.be/PBKsupBquok About Aboutness] (2015)<br />
<br />
*[https://www.youtube.com/watch?v=9zJZiFY-ZrE Metaphysics After Darwin] (2015)<br />
<br />
*[https://www.youtube.com/watch?v=3U55vU8SfEo How to Build an Imaging Ontology] (2015)<br />
<br />
*[https://www.youtube.com/watch?v=b4kULamlFaM&feature=youtu.be The Ontology of Disease] (2014)<br />
<br />
*[https://www.youtube.com/watch?v=3Vw3R5UCcDI Mind, Language and Emotions] (2014)<br />
<br />
*A multi-unit series of presentations on [http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity] (May 16-18, 2012)<br />
<br />
*A 1 hour presentation on [http://libweb1.lib.buffalo.edu/video/training/DataDayPart1.asp "Ontologies: What Librarians Need to Know"]. Smith presentation starts at 89 minutes. (November 14, 2011)<br />
<br />
*An 8-unit Introduction to Ontology in [http://ontology.buffalo.edu/smith/IntroOntology_Course.html streaming video] format (October 10-11, 2009)<br />
<br />
*Introduction to Biomedical Ontologies. An 8-unit training course in [http://ontology.buffalo.edu/smith/BioOntology_Course.html streaming video] format (April 12-13, 2008)<br />
<br />
*From Basic Formal Ontology to the Information Artifact Ontology. A two-day tutorial given in conjunction with the International Conference on Biomedical Ontology, Buffalo, NY, July 25-26, 2009, available in streaming video format:<br />
::* Barry Smith: Introduction to Basic Formal Ontology. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc1UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc2UB.wmv Part 2]<br />
::* Werner Ceusters: Introduction to Referent Tracking. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc3UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc4UB.wmv Part 2]<br />
::* Alan Ruttenberg: Introduction to the Ontology for Biomedical Investigations (OBI) and the Information Artifact Ontology. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc5UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc6UB.wmv Part 2]<br />
::* Discussion session. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc7UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc8UB.wmv Part 2] <br />
<br />
*Ontology Evaluation in Biomedicine: The OBO Foundry (Ontolog Forum, December 21, 2006)<br />
::[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2005_10_13 Details] [http://ontolog.cim3.net/file/work/OntologyMeasurementEvaluation/2006-12-21_OntologyEvaluationInBiomedicine/OBO-Foundry--BarrySmith_20061221.ppt Slides] [http://obofoundry.org/OntologDec06.mp3 Audio]<br />
<br />
*How to Build an Ontology (Tutorial, Stanford University, October 25, 2006)<br />
::[http://stream.buffalo.edu/shared/research/phismith/Stanford10-25-06/Tutorial.rm Realplayer]<br />
::[http://stream.buffalo.edu/shared/research/phismith/Stanford10-25-06/Tutorial.WMV Windows Mediaplayer] <br />
<br />
*Presentations at the Workshop on [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images] {Stanford University, March 24-25, 2006)<br />
::[http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-09.ram Basic Principles]<br />
::[http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-11.ram Towards an Ontology for the Imaging Domain]<br />
<br />
*The HL7 Reference Information Model<br />
::Presentation at the Regenstrief Institute, Indianapolis, November 9, 2005 (right click to save target: [http://stream.buffalo.edu/shared/research/phismith/regenstrief.mpg])<br />
<br />
== '''NCBO Dissemination Workshops in Biomedical Ontology''' ==<br />
<br />
*The Ontology of Images: March 24-25, 2006 in Stanford, CA.<br />
::[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
*The Ontology of Diseases: November 6-7, 2006 in Baltimore, MD. <br />
::[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases#Agenda Slides and Audio Presentations]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12740Dissemination Wiki2015-08-08T16:34:54Z<p>Phismith: </p>
<hr />
<div>== Events ==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== NCBO Webinar Series ==<br />
<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12739Dissemination Wiki2015-08-08T16:33:20Z<p>Phismith: /* Past Events */</p>
<hr />
<div>==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== NCBO Webinar Series ==<br />
<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
[http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events.<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12738Meetings and Events2015-08-08T16:32:42Z<p>Phismith: </p>
<hr />
<div>== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==<br />
<br />
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 20<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12737Meetings and Events2015-08-08T16:31:43Z<p>Phismith: </p>
<hr />
<div>== NCBO Webinar Series ==<br />
<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==<br />
<br />
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 20<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12736Meetings and Events2015-08-08T16:31:10Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2014 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==<br />
<br />
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 20<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12735Dissemination Wiki2015-08-08T16:30:26Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12718Dissemination Wiki2015-02-14T00:18:16Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 20<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Infectious_Disease_Ontology_2008&diff=12717Infectious Disease Ontology 20082015-02-08T15:10:18Z<p>Phismith: /* Background */</p>
<hr />
<div>== Background ==<br />
<br />
A two-day IDO workshop for invited participants will be held in Buffalo, New York on September 16-17, 2008. This workshop is being organized with the generous support of the Burroughs Wellcome Fund.<br />
<br />
The background to this meeting is an Infectious Disease Ontology workshop ([http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology IDO 2007]), which was organized in Cold Spring Harbor Laboratories in 2007. The workshop had four primary outcomes:<br />
<br />
*Training of a core set of infectious disease researchers in ontology-development methods, facilitating their participation in ontology development;<br />
<br />
*Development of a core Infectious Disease Ontology (IDO) which is designed to serve as a consensus-based controlled vocabulary resource for annotation of data representing all entities relevant to infectious diseases generally;<br />
<br />
*Establishment of a method for creating, on the basis of IDO, a set of ontologies that can be developed in a distributed fashion yet together cover the entire infectious disease domain (the set consists of the above-described core IDO ontology plus sub-domain-specific extensions of the core, such as IDO-tuberculosis, IDO-malaria);<br />
<br />
*Formation of an Infectious Disease Ontology Consortium (IDOC) whose members have agreed to contribute towards continued development of the core IDO and to develop seven different sub-domain-specific ontologies.<br />
<br />
*http://ontology.buffalo.edu/08/ido-2008.pdf Flier]<br />
<br />
== IDO 2008 Goals ==<br />
<br />
To capitalize on these outcomes and to sustain the momentum gained from the 2007 workshop, we have scheduled a second Infectious Disease Ontology workshop, to be held in Buffalo, NY on September 16-17, 2008. The goals of this meeting are:<br />
<br />
1. to critically evaluate the IDO core ontology for biological and ontological correctness<br />
<br />
2. to critically evaluate the ontology development test cases initiated at IDO 2007 for biological and ontological correctness<br />
<br />
3. to identify specific research questions that the ontologies should help to provide answers to in domains such as:<br />
*analysis of high-throughput data (data mining) <br />
*analysis of literature (text-mining)<br />
*clinical decision support<br />
*case-control studies<br />
*disease surveillance<br />
*genetic susceptibility of infectious disease<br />
*design of prevention and treatment strategies<br />
<br />
== IDO 2008 Schedule ==<br />
<br />
'''Day 1: Tuesday, September 16'''<br />
<br />
*8:30am - Continental Breakfast<br />
<br />
*9:00am - ''Introduction to the Workshop'' [http://ontology.buffalo.edu/08/IDO/COWELL.ppt slides] (Lindsay Cowell)<br />
<br />
*9:15am - ''Introduction to Biomedical Ontology'' [http://ontology.buffalo.edu/08/IDO/SMITH.ppt slides] (Barry Smith)<br />
<br />
*10:00am - ''Introduction to the Infectious Disease Ontology'' [http://ontology.buffalo.edu/08/IDO/Cowell%20IDO.ppt slides] (Lindsay Cowell)<br />
<br />
*11:00am - Refreshment Break<br />
<br />
*11:30am - ''The Infectious Disease Portion of the Immune Epitope Database Ontology and its Relationship to IDO'' [http://ontology.buffalo.edu/08/IDO/PETERS.ppt slides] (Bjoern Peters)<br />
<br />
*12:30pm - Lunch<br />
<br />
*1:30pm - ''The Vaccine Ontology'' [http://ontology.buffalo.edu/08/IDO/HE.ppt slides] (Yongqun He)<br />
<br />
*2:30pm - ''The Staphylococcus Aureus Ontology'' [http://ontology.buffalo.edu/08/IDO/FOWLER.ppt slides] (Vance Fowler)<br />
<br />
*3:30pm - Refreshment Break<br />
<br />
*4:00pm - ''The Infective Endocarditis Ontology and SemanticDB'' [http://ontology.buffalo.edu/08/IDO/ARABANDI.pdf slides] (Sivaram Arabandi)<br />
<br />
*5:30pm - Dinner<br />
<br />
*7:30pm - ''Ontologies in the Future of Infectious Disease Research: A Discussion'' (Introduced and Moderated by Christos Louis)<br />
<br />
'''Day 2: Wednesday, September 17'''<br />
<br />
*8:30am - Continental Breakfast<br />
<br />
*9:00am - ''The Vector-Borne Disease Ontology'' [http://ontology.buffalo.edu/08/IDO/LOUIS.ppt slides] (Christos Louis)<br />
<br />
*10:00am - ''The Dengue Fever Ontology'' [http://ontology.buffalo.edu/08/IDO/LOZANO.ppt slides] (Saul Lozano-Fuentes)<br />
<br />
*11:00am - Refreshment Break<br />
<br />
*11:15am - ''The Influenza Ontology'' [http://ontology.buffalo.edu/08/IDO/SQUIRES.ppt slides] (Burke Squires)<br />
<br />
*11:45am - ''Ontology Evaluation: Methods and Metrics'' [http://ontology.buffalo.edu/08/IDO/Luciano.pdf slides] (Joanne Luciano)<br />
<br />
*12:15pm - Working Lunch: ''Refining IDO and Its Extensions to Better Support Interoperability'' (Barry Smith)<br />
<br />
*1:45pm - ''Controlled Vocabularies and Ontologies'' [http://ontology.buffalo.edu/08/IDO/COLEMAN.ppt slides] (Marlize Coleman)<br />
<br />
*2:45pm - ''Leveraging Annotated Data with Query on the Semantic Web'' [http://sw.neurocommons.org/presentations/Leveraging-annotated-data-with-query-on-the-Semantic-Web.pdf slides] (Alan Ruttenberg)<br />
<br />
*3:30pm - ''Goals for the Coming Year'' (Lindsay Cowell)<br />
<br />
*4:00pm - Close<br />
<br />
'''Format'''<br />
<br />
One person will designated as moderator for each session. All sessions will emphasize group discussion over presentation. Moderators of the ontology evaluation sessions will be responsible for beginning the session with a brief presentation of the ontology and will be prepared to navigate and display the ontology throughout the discussion. Moderators for the remaining sessions will be responsible for jumpstarting discussion with a brief outline of discussion points.<br />
<br />
== IDO 2008 Venue ==<br />
<br />
The venue for our meeting will be the [http://www.ramadahotelamherst.com/ramada-hotel.html Ramada Inn and Conference Center] in Amherst, NY.<br />
<br />
== Participants ==<br />
<br />
Sivaram Arabandi (Cleveland Clinic)<br />
<br />
Robert Arp (NCBO / University at Buffalo)<br />
<br />
Tiffani Bright (Columbia University)<br />
<br />
Marlize Coleman (Colorado State University)<br />
<br />
Lindsay Cowell (Duke University Medical Center)<br />
<br />
Alexander Diehl (Gene Ontology / The Jackson Laboratory)<br />
<br />
Vance Fowler (Duke University Medical Center)<br />
<br />
Steve Gill (University at Buffalo)<br />
<br />
Louis Goldberg (University at Buffalo)<br />
<br />
Yongqun "Oliver" He (University of Michigan Medical Center)<br />
<br />
Yentram Huyen (Lockheed Martin, OTIS/NIAID/NIH Contractor)<br />
<br />
Carla Kuiken (Los Alamos National Laboratory)<br />
<br />
Alan J. Lesse (University at Buffalo)<br />
<br />
Christos (Kitsos) Louis (IMBB-FORTH, Crete)<br />
<br />
Saul Lozano-Fuentes (Colorado State University)<br />
<br />
Joanne Luciano (The MITRE Corp.)<br />
<br />
Anna Maria Masci (Duke University Medical Center)<br />
<br />
Simon Milton (University of Melbourne)<br />
<br />
Chris Mungall (Gene Ontology / Lawrence Berkeley National Laboratory)<br />
<br />
Darren Natale (Protein Ontology / Georgetown University)<br />
<br />
Bjoern Peters (La Jolla Institute for Allergy & Immunology)<br />
<br />
Alan Ruttenberg (Science Commons)<br />
<br />
Richard Scheuermann (University of Texas Southwestern Medical Center at Dallas)<br />
<br />
Lynn Schriml (University of Maryland)<br />
<br />
Barry Smith (NCBO / University at Buffalo)<br />
<br />
Burke Squires (University of Texas Southwestern Medical Center at Dallas)<br />
<br />
Christian Stoeckert (Penn Center for Bioinformatics / Univ of PA)<br />
<br />
Tod Strugnell (Sanofi Pasteur) <br />
<br />
Pantelis Topalis (IMBB-FORTH, Crete)<br />
<br />
== Progress Since the IDO 2007 ==<br />
Progress has been made in the development of IDO and seven sub-domain-specific extensions of IDO. The sub-domain-specific extensions ontologies for the following diseases:<br />
::Tuberculosis (Carol Dukes-Hamilton, Duke University Medical Center)<br />
::Staphylococcus aureus bacteremia (Vance Fowler, Duke University Medical Center)<br />
::Infective endocarditis (Sivaram Arabandi, Cleveland Clinic Foundation)<br />
::Malaria and other vector-borne diseases (Christos Louis, Institute for Molecular Biology and Biochemistry – FORTH)<br />
::Dengue fever (Saul Lozano-Fuentes, Colorado State)<br />
::Influenza (Stuart Sealfon, Mount Sinai School of Medicine; Richard Scheuermann, University of Texas, Southwestern Medical Center)<br />
<br />
Development of IDO has continued along two fronts, expansion of content driven by development of the subdomain-specific ontologies and refinement of the approach to representing infectious disease-relevant entities ontologically.<br />
<br />
IDO is supplemented also by a '''[http://www.violinet.org/wiki/index.php/Vaccine_Ontology Vaccine Ontology]''' which is being developed by Yongqun He (University of Michigan) in collaboration with Lindsay Cowell and Barry Smith. <br />
<br />
In collaboration with Dr. Carol Dukes-Hamilton at Duke University Medical Center, Drs. Cowell and Smith have begun developing a '''draft ontology of tuberculosis''' and a method for defining ISO 11179 data elements using logical constructs based on terms derived from ontologies. Dr. Dukes-Hamilton’s research group has defined eighty tuberculosis data elements and curated these into the National Cancer Institute’s metadata repository, caDSR. Definition of these data elements using ontology terms provides not only a formal method for data element definition, significantly improving the resulting definitions, but also interoperability between data elements (along with the data associated therewith) and the vast amount of biomedical data and information annotated with terms from the same or an interoperable set of ontologies. <br />
<br />
In collaboration with Dr. Vance Fowler at Duke University Medical Center, Drs. Cowell and Smith have developed a '''draft ontology of Staphylococcus aureus bacteremia'''.<br />
<br />
Dr. Sivaram Arabandi of the Cleveland Clinic Foundation is part of a large team developing SemanticDB technology, a semantic datastore with query functionality, having primary focus on Cardiology and Cardiothoracic Surgery. A portion of this work involves developing an IDO extension '''ontology for infective endocarditis'''.<br />
<br />
Dr. Christos Louis’ research group at the Institute of Molecular Biology and Biochemistry (IMBB), one of the seven institutes of the Foundation for Research and Technology – Hellas (FORTH), based in Crete, is developing an '''IDO extension for malaria and other vector-borne diseases'''. The group is working in parallel to develop an '''ontology of the physiological processes of disease vectors''' that play a direct or indirect role in disease transmission. These ontology development efforts are being pursued within the context of VectorBase (http://www.vectorbase.org), an NIAID Bioinformatics Resource Center for invertebrate vectors of human pathogens, and embracing efforts to construct decision support systems for vector-borne diseases.<br />
<br />
A collaborative group of researchers including Joanne Luciano (MITRE), Burke Squires (University of Texas, Southwestern Medical Center) and Lynn Schriml (University of Maryland, School of Medicine), have utilized the Ontology of Biomedical Investigations (OBI) components of<br />
materials/objects, qualities and processes to develop an '''influenza ontology''' and to map influenza virus sequence and surveillance terms to their respective materials and qualities.<br />
<br />
The Influenza Ontology describes by category the Investigator, Event, Location, Strain Specimen, Amplified Strain Specimen, Virion RNA, Treatment, and Host. The groups from BHB, IGS and MITRE have consolidated influenza sequence and surveillance terms from resources<br />
such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS), and the Gemina and Influenza Virus Genome Projects. The list of data fields that describe influenza virus isolates and surveillance data has been created by consolidating data fields from data contributors and separate CEIRS participants. The initial<br />
ontology of terms has been created with a cross reference of terms to existing OBO Foundry ontologies.<br />
<br />
The CEIRS projects consist of two research areas: influenza virus surveillance and basic influenza virus sequence and genetic reassortment. Working in collaboration with Dr. Richard Scheuermann, University of Texas, Southwestern Medical Center, the immediate goal is to apply the Influenza Virus Ontology to data collected as part of the CEIRS projects in an effort to enable influenza researchers to more easily elucidate the causes of influenza virulence and pathogenesis. Once completed, a database schema based upon the OBI will serve as the repository for influenza sequence and surveillance data through the<br />
BHB portal.<br />
<br />
For more information about IDO and its sub-domain extensions, see http://www.infectiousdiseaseontology.org.</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Workshop_Agenda&diff=12710Workshop Agenda2014-12-01T22:04:30Z<p>Phismith: </p>
<hr />
<div>'''BIRN Ontology Workshop 2006'''<br />
<br />
===Feb 28===<br />
#<b>Background and motivation (9AM-10AM)</b><br />
#* Brief overview of major biological problems BIRN seeks to address <b>[BIRN]</b><br />
#*<b>10-10:15am</b>Break<br />
#<b>Tools (10:15AM-Noon)</b><br />
#* Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) <b>[BIRN]</b><br />
#* Tutorial on Protégé and plugins (examples from other ontology projects) <b>[Stanford]</b><br />
#* Discussion<br />
#<b>Ontology Usage (1PM-5PM)</b><br />
#*<b>1-2:30pm</b> Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO, epressing biological concepts in terms of an ontology; annotation tools) <b>[Stanford]</b><br />
#*<b>2:30-3pm</b> Break<br />
#*<b>3-4pm</b> Possible future directions (formal relation ontologies, composed annotations, image annotation with ontologies) <b>[Stanford]</b><br />
#*<b>4-5pm</b> Discussion<br />
<br />
===Mar 1===<br />
#<b>Basics of Ontologies (9AM-Noon)</b><br />
#*<b>9-10am</b> Discuss current capabilities and challenges related to ontologies in BIRN <b>[BIRN]</b><br />
#*<b>10-10:30</b>Break<br />
#*<b>10:30-11:30</b> How to Build an Ontology <b>[Barry]</b><br />
#*<b>11:30-noon</b> The Ontology of Relations <b>[Barry]</b><br />
#<b>Content (1PM-3PM)</b><br />
#*<b>1-2pm</b> Best practices; lessons learned from other ontology development projects <b>[Barry]</b><br />
#*<b>2-3pm</b> Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)<br />
#** BIRN Ontologies: An Overview <b>[Barry]</b><br />
#*<b>3-3:30pm</b>Break<br />
#<b>Potential Applications: what do we need to get there from here? (3:30PM-5PM) [Barry and Nigam]</b><br />
#* What tools to be developed, what content should be put into OWL, what tools cBiO is developing<br />
#* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery<br />
#* Computer reasoning with neuroanatomical/spatial component of Neuroscience data</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12709Meetings and Events2014-12-01T22:04:03Z<p>Phismith: </p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2014 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12704Dissemination Wiki2014-11-26T19:28:44Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 20<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12703Meetings and Events2014-11-14T01:42:51Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2014 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12702Dissemination Wiki2014-11-14T01:42:24Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[The Role of Ontology in Big Cancer Data]]''', National Cancer Institute, Bethesda, MD, May 12-13, 20<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12690Meetings and Events2014-07-03T00:07:28Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12689Meetings and Events2014-06-29T11:48:11Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''<br />
*Georgetown, DC, June 18-19, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop#Draft_Schedule:_Tutorial Tutorial on Ontology for Image Informatics]'''<br />
*Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''<br />
*Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12688Meetings and Events2014-06-29T11:47:25Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]''', Georgetown, DC, June 18-19,2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop#Draft_Schedule:_Tutorial Tutorial on Ontology for Image Informatics]''', Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]''', Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12687Dissemination Wiki2014-06-29T11:47:04Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12686Dissemination Wiki2014-06-29T11:46:43Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]''', Georgetown, DC, June 18-19,2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop#Draft_Schedule:_Tutorial Tutorial on Ontology for Image Informatics]''', Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]''', Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12676Dissemination Wiki2014-03-12T23:23:38Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]''', Georgetown, DC, June 18-19,2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop#Draft_Schedule:_Tutorial Tutorial on Ontology for Image Informatics]''', Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]''', Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12675Dissemination Wiki2014-03-12T23:21:48Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]''', Georgetown, DC, June 18-19,2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop#Draft_Schedule:_Tutorial Tutorial on Ontology for Image Informatics]''', Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]''', Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12646Dissemination Wiki2014-01-14T13:37:10Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]''', Georgetown, DC, June 18-19,2014 (by invitation only)<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop#Draft_Schedule:_Tutorial Tutorial on Ontology for Image Informatics]''', Buffalo, NY, June 23, 2014<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/Third_CTS_Ontology_Workshop Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]''', Buffalo, NY, June 24-25, 2014.<br />
<br />
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12642Meetings and Events2013-12-13T18:49:18Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''<br />
*June 12-13th, 2007, University of Utah, Salt Lake City, UT<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12641Meetings and Events2013-12-06T22:24:06Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12605Dissemination Wiki2013-04-12T16:52:03Z<p>Phismith: </p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12586Meetings and Events2013-02-20T14:45:28Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12585Dissemination Wiki2013-02-20T14:45:10Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[http://www.ebi.ac.uk/training/course/biomedical-ontologies#course_registration Building Applications with Biomedical Ontologies]'''<br />
* European Bioinformatics Institute, Hinxton, UK, April 18-19, 2013<br />
* This course is aimed at those working in the development and implementation of biomedical applications and who wish to understand how ontologies can help with tasks such as annotation of data, searching and data integration. The course is suitable for both academics and industry alike, including advanced PhD students, research scientists and software developers. It is expected that those attending the course will already have some basic familiarity with what an ontology is though an overview of the basic features of an ontology will be given. There will be some exercises involving the use of Java and with using RESTful Web services so some understanding of Java would be required if you wish to participate in these exercises.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12584Dissemination Wiki2013-02-20T14:44:49Z<p>Phismith: /* Past Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.ebi.ac.uk/training/course/biomedical-ontologies#course_registration Building Applications with Biomedical Ontologies]'''<br />
* European Bioinformatics Institute, Hinxton, UK, April 18-19, 2013<br />
* This course is aimed at those working in the development and implementation of biomedical applications and who wish to understand how ontologies can help with tasks such as annotation of data, searching and data integration. The course is suitable for both academics and industry alike, including advanced PhD students, research scientists and software developers. It is expected that those attending the course will already have some basic familiarity with what an ontology is though an overview of the basic features of an ontology will be given. There will be some exercises involving the use of Java and with using RESTful Web services so some understanding of Java would be required if you wish to participate in these exercises.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events from 2005]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12583Meetings and Events2013-02-20T14:44:05Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2013 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12582Meetings and Events2013-02-20T14:43:28Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2012 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2013 ==<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new IKFC Clinical and Translational Science Ontology Affinity Group which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12581Dissemination Wiki2013-02-20T14:43:00Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.ebi.ac.uk/training/course/biomedical-ontologies#course_registration Building Applications with Biomedical Ontologies]'''<br />
* European Bioinformatics Institute, Hinxton, UK, April 18-19, 2013<br />
* This course is aimed at those working in the development and implementation of biomedical applications and who wish to understand how ontologies can help with tasks such as annotation of data, searching and data integration. The course is suitable for both academics and industry alike, including advanced PhD students, research scientists and software developers. It is expected that those attending the course will already have some basic familiarity with what an ontology is though an overview of the basic features of an ontology will be given. There will be some exercises involving the use of Java and with using RESTful Web services so some understanding of Java would be required if you wish to participate in these exercises.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12579Dissemination Wiki2013-02-08T00:20:47Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.ebi.ac.uk/training/course/biomedical-ontologies#course_registration Building Applications with Biomedical Ontologies]'''<br />
* European Bioinformatics Institute, Hinxton, UK, April 18-19, 2013<br />
* This course is aimed at those working in the development and implementation of biomedical applications and who wish to understand how ontologies can help with tasks such as annotation of data, searching and data integration. The course is suitable for both academics and industry alike, including advanced PhD students, research scientists and software developers. It is expected that those attending the course will already have some basic familiarity with what an ontology is though an overview of the basic features of an ontology will be given. There will be some exercises involving the use of Java and with using RESTful Web services so some understanding of Java would be required if you wish to participate in these exercises.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''<br />
*Orlando, FL, February 11-12, 2013<br />
*This is the second meeting of the new IKFC Clinical and Translational Science Ontology Affinity Group which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12578Dissemination Wiki2013-02-07T22:19:44Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.ebi.ac.uk/training/course/biomedical-ontologies#course_registration Building Applications with Biomedical Ontologies]'''<br />
* European Bioinformatics Institute, Hinxton, UK, April 18-19, 2013<br />
* This course is aimed at those working in the development and implementation of biomedical applications and who wish to understand how ontologies can help with tasks such as annotation of data, searching and data integration. The course is suitable for both academics and industry alike, including advanced PhD students, research scientists and software developers. It is expected that those attending the course will already have some basic familiarity with what an ontology is though an overview of the basic features of an ontology will be given. There will be some exercises involving the use of Java and with using RESTful Web services so some understanding of Java would be required if you wish to participate in these exercises.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]''', Orlando, FL, February 11-12, 2013<br />
<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12577Dissemination Wiki2013-02-07T22:19:28Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.ebi.ac.uk/training/course/biomedical-ontologies#course_registration Building Applications with Biomedical Ontologies]'''<br />
* European Bioinformatics Institute, Hinxton, UK, April 18-19, 2013<br />
* This course is aimed at those working in the development and implementation of biomedical applications and who wish to understand how ontologies can help with tasks such as annotation of data, searching and data integration. The course is suitable for both academics and industry alike, including advanced PhD students, research scientists and software developers. It is expected that those attending the course will already have some basic familiarity with what an ontology is though an overview of the basic features of an ontology will be given. There will be some exercises involving the use of Java and with using RESTful Web services so some understanding of Java would be required if you wish to participate in these exercises.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]''', Orlando, FL, February 11-12, 2013<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12560Dissemination Wiki2013-01-23T01:39:21Z<p>Phismith: </p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''<br />
* Paris, November 29, 2012<br />
<br />
'''[http://www.ebi.ac.uk/training/course/biomedical-ontologies#course_registration Building Applications with Biomedical Ontologies]'''<br />
* European Bioinformatics Institute, Hinxton, UK, April 18-19, 2013<br />
* This course is aimed at those working in the development and implementation of biomedical applications and who wish to understand how ontologies can help with tasks such as annotation of data, searching and data integration. The course is suitable for both academics and industry alike, including advanced PhD students, research scientists and software developers. It is expected that those attending the course will already have some basic familiarity with what an ontology is though an overview of the basic features of an ontology will be given. There will be some exercises involving the use of Java and with using RESTful Web services so some understanding of Java would be required if you wish to participate in these exercises.<br />
<br />
'''[[NCBO Hackathon 2013]]'''<br />
* Stanford University, Stanford, CA, April 29-30, 2013<br />
* ''Registration link coming soon''<br />
<br />
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12524Dissemination Wiki2012-11-24T16:33:01Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''PRO-PO-GO Meeting'''<br />
*Buffalo, NY, May 15-16, 2013<br />
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12523Dissemination Wiki2012-11-24T16:32:01Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''PRO-PO-GO Meeting'''<br />
*The goals of this meeting are to enhance coordination in ontology development and use in relation to plant genomics, proteomics and related fields. <br />
*Buffalo, NY, May 15-16, 2013<br />
<br />
'''NCBO Webinar Series'''<br />
* The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12522Dissemination Wiki2012-11-24T16:31:44Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
'''PRO-PO-GO Meeting'''<br />
*The goals of this meeting are to enhance coordination in ontology development and use in relation to plant genomics, proteomics and related fields. <br />
*Buffalo, NY, May 15-16, 2013<br />
<br />
* '''NCBO Webinar Series'''<br />
** The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12521Meetings and Events2012-11-24T16:28:20Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2012 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2012 ==<br />
<br />
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''<br />
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.<br />
<br />
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''<br />
*November 8-9, 2012<br />
<br />
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''<br />
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012<br />
<br />
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012<br />
* NCBO Web services: Powering Semantically Aware Applications<br />
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.<br />
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Dissemination_Wiki&diff=12520Dissemination Wiki2012-11-24T16:26:59Z<p>Phismith: /* NCBO Dissemination and Outreach: Future Events */</p>
<hr />
<div>== NCBO Dissemination and Outreach: Future Events == <br />
<br />
<br />
* '''NCBO Webinar Series'''<br />
** The full list of Webinar presentations and recordings for past presentations is available [http://www.bioontology.org/webinar-series here]<br />
<br />
==Past Events==<br />
<br />
*'''[[Meetings and Events | Cumulative List of NCBO Events (2005 - 2012)]]'''<br />
<br />
== Educational Documents, Video and Audio Presentations ==<br />
<br />
* Educational materials created and supplied by the NCBO are available [http://www.bioontology.org/learning-about-ontologies here]<br />
<br />
* For video and audio presentations of NCBO dissemination and training events see: [[Ontology Training: Video and Audio Presentations]]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12425Meetings and Events2012-08-14T20:44:06Z<p>Phismith: </p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2012 ==<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12424Meetings and Events2012-08-14T20:43:20Z<p>Phismith: </p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2012 ==<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12423Meetings and Events2012-08-14T20:28:54Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2012 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2012 ==<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Ontology_Training:_Video_and_Audio_Presentations&diff=12352Ontology Training: Video and Audio Presentations2012-06-19T13:18:34Z<p>Phismith: /* Barry Smith */</p>
<hr />
<div>== '''[http://icbo.buffalo.edu ICBO]''' ==<br />
<br />
Video and audio training material from the 2009 International Conference on Biomedical Ontology is available [http://www.bioontology.org/wiki/index.php/Tutorials_and_Classes here]<br />
<br />
Videos of all presentations and discussions at the 2011 International Conference on Biomedical Ontology are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
<br />
== '''[http://bmir.stanford.edu/people/view.php/mark_a_musen/ Mark Musen]''' ==<br />
<br />
*If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies (Ontolog Form, December 6, 2007)<br />
::[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2007_12_06 Details] [http://ontolog.cim3.net/file/resource/presentation/MarkMusen_20071206/NCBO--MarkMusen_20071206.pdf Slides] [http://ontolog.cim3.net/file/resource/presentation/MarkMusen_20071206/NCBO-BioPortal--MarkMusen_Ontolog-AudioRecording_conf-133566_20071206.mp3 Audio]<br />
<br />
== '''[http://ontology.buffalo.edu/smith Barry Smith]''' ==<br />
<br />
*A multi-unit series of presentations on [http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity] (May 16-18, 2012)<br />
<br />
*A 1 hour presentation on [http://libweb1.lib.buffalo.edu/video/training/DataDayPart1.asp "Ontologies: What Librarians Need to Know"]. Smith presentation starts at 89 minutes. (November 14, 2011)<br />
<br />
*An 8-unit Introduction to Ontology in [http://ontology.buffalo.edu/smith/IntroOntology_Course.html streaming video] format (October 10-11, 2009)<br />
<br />
*Introduction to Biomedical Ontologies. An 8-unit training course in [http://ontology.buffalo.edu/smith/BioOntology_Course.html streaming video] format (April 12-13, 2008)<br />
<br />
*From Basic Formal Ontology to the Information Artifact Ontology. A two-day tutorial given in conjunction with the International Conference on Biomedical Ontology, Buffalo, NY, July 25-26, 2009, available in streaming video format:<br />
::* Barry Smith: Introduction to Basic Formal Ontology. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc1UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc2UB.wmv Part 2]<br />
::* Werner Ceusters: Introduction to Referent Tracking. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc3UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc4UB.wmv Part 2]<br />
::* Alan Ruttenberg: Introduction to the Ontology for Biomedical Investigations (OBI) and the Information Artifact Ontology. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc5UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc6UB.wmv Part 2]<br />
::* Discussion session. [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc7UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc8UB.wmv Part 2] <br />
<br />
*Ontology Evaluation in Biomedicine: The OBO Foundry (Ontolog Forum, December 21, 2006)<br />
::[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2005_10_13 Details] [http://ontolog.cim3.net/file/work/OntologyMeasurementEvaluation/2006-12-21_OntologyEvaluationInBiomedicine/OBO-Foundry--BarrySmith_20061221.ppt Slides] [http://obofoundry.org/OntologDec06.mp3 Audio]<br />
<br />
*How to Build an Ontology (Tutorial, Stanford University, October 25, 2006)<br />
::[http://stream.buffalo.edu/shared/research/phismith/Stanford10-25-06/Tutorial.rm Realplayer]<br />
::[http://stream.buffalo.edu/shared/research/phismith/Stanford10-25-06/Tutorial.WMV Windows Mediaplayer] <br />
<br />
*Presentations at the Workshop on [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images] {Stanford University, March 24-25, 2006)<br />
::[http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-09.ram Basic Principles]<br />
::[http://med.stanford.edu/irt/mmt/video/ontology/ontology-03-24-2006-11.ram Towards an Ontology for the Imaging Domain]<br />
<br />
*The HL7 Reference Information Model<br />
::Presentation at the Regenstrief Institute, Indianapolis, November 9, 2005 (right click to save target: [http://stream.buffalo.edu/shared/research/phismith/regenstrief.mpg])<br />
<br />
== '''NCBO Dissemination Workshops in Biomedical Ontology''' ==<br />
<br />
*The Ontology of Images: March 24-25, 2006 in Stanford, CA.<br />
::[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
*The Ontology of Diseases: November 6-7, 2006 in Baltimore, MD. <br />
::[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases#Agenda Slides and Audio Presentations]</div>Phismithhttps://www.bioontology.org//mediawiki/index.php?title=Meetings_and_Events&diff=12351Meetings and Events2012-06-19T00:09:08Z<p>Phismith: /* NCBO-Sponsored Dissemination and Training Events 2005-2012 */</p>
<hr />
<div>== Upcoming NCBO-Sponsored Dissemination and Training Events ==<br />
<br />
See [http://www.bioontology.org/wiki/index.php/Dissemination_Wiki Dissemination Wiki] for upcoming dissemination and training events. <br />
<br />
== NCBO-Sponsored Dissemination and Training Events 2005-2012 ==<br />
<br />
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]<br />
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,<br />
<br />
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]<br />
* Buffalo, NY, June 11-13, 2012.<br />
<br />
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''<br />
*Baltimore, MD, April 24, 2012.<br />
<br />
'''[[Clinical and Translational Science Ontology Workshop]]'''<br />
*Baltimore, MD, April 25-26, 2012. <br />
<br />
'''[[Introduction to Bio-Ontologies and Their Applications]]'''<br />
*Stanford University, CA, March 15, 2012.<br />
<br />
'''[[AMIA CRI Demo]]''' <br />
*San Francisco, CA, March 22, 2012.<br />
<br />
'''[[NCBO Hackathon]]'''<br />
*Stanford University, CA, March 26-27, 2012.<br />
<br />
'''[[Introduction to Bio-Ontologies]]'''<br />
*New York Botanical Gardens, Bronx, NY, February 5, 2012.<br />
<br />
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications<br />
*London, UK, December 7-9, 2011<br />
<br />
'''DBCLS Hackathon'''<br />
*Kyoto, Japan, August 22-26, 2011<br />
<br />
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]''' <br />
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]<br />
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011. <br />
<br />
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] ''' <br />
*Atlanta, GA, June 29, 2011.<br />
<br />
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''<br />
*San Diego, CA, March 16-19, 2011. <br />
<br />
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''<br />
*Baltimore, MD, December 8-9, 2010.<br />
<br />
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''<br />
*Tutorial, University at Buffalo, October 23, 2010.<br />
<br />
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''<br />
*September 9-15, 2010, Cape Town, South Africa, <br />
<br />
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''<br />
*June 26-27, 2010, Stanford, CA.<br />
<br />
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]''' <br />
*Toronto, Canada, May 11-14, 2010.<br />
<br />
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''<br />
*March 15-16, 2010, NIST, Gaithersburg, MD<br />
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications<br />
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]<br />
<br />
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''<br />
*February 26-28, 2010, Keio University, Tokyo, Japan<br />
*Conference co-sponsored with the Japanese Center for Ontological Research<br />
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.<br />
<br />
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''<br />
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
<br />
'''[[The Future of the Foundational Model of Anatomy]]''' <br />
*November 11-12, 2009, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]<br />
<br />
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''<br />
*October 10-11, 2009, Buffalo, NY<br />
*Co-sponsored with the University at Buffalo<br />
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]<br />
<br />
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''<br />
*September 3-4, 2009, University of Milan, Biccaca, Italy<br />
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council<br />
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]<br />
<br />
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''<br />
*July 27-29, 2009, Buffalo, NY <br />
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo<br />
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]<br />
<br />
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''<br />
*July 25-26, 2009, Buffalo, NY <br />
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith<br />
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]<br />
<br />
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]''' <br />
*Mar 30-Apr 1, 2009, Miami, FL<br />
*Co-sponsored by the International Association for Dental Research<br />
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"] <br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]''' <br />
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting<br />
*Co-organized with the Japanese Center for Ontological Research <br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]''' <br />
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]<br />
<br />
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''<br />
*September 3-4, 2008, Dallas, TX<br />
*NCBO Dissemination Workshop<br />
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]<br />
<br />
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''<br />
*July 19, 2008, Toronto, Canada.<br />
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]<br />
<br />
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''<br />
*June 20, 2008, Minneapolis, MN<br />
*Held in conjunction with the Evolution 2008 meeting.<br />
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])<br />
*[http://kaboodle.nescent.org/?q=node/58 Report]<br />
<br />
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''<br />
*May 19-20, 2008, Denver, CO<br />
*NCBO Dissemination Workshop<br />
<br />
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''<br />
*April 12-13, 2008, Buffalo, NY<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]<br />
<br />
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]''' <br />
*March 27-28, 2008, Newark, NJ<br />
*NCBO Dissemination Workshop<br />
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]<br />
<br />
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''<br />
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]<br />
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research<br />
<br />
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''<br />
*July 23-27, 2007: Schloss Dagstuhl, Germany<br />
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner<br />
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''<br />
*July 21, 2007, Vienna, Austria<br />
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)<br />
<br />
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ↑]'''<br />
*June 20-23, 2007, Schloss Dagstuhl, Germany <br />
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''<br />
*May 16-17 2007, NIH Campus, Bethesda, MD<br />
*NCBO Dissemination Workshop<br />
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]<br />
<br />
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''<br />
*March 27-30, 2007, Dagstuhl, Germany<br />
*NCBO Dissemination Workshop<br />
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report] <br />
<br />
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] <br />
*December 21, 2006 <br />
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]<br />
<br />
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]<br />
*December 1-2, 2006, Clark Center, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
<br />
'''Connecting BioPAX to Other Biomedical Ontologies''' <br />
*November 20-21, 2006, MIT, Boston, MA<br />
*NCBO Tutorial (Faculty: Barry Smith)<br />
<br />
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''<br />
*AMIA Anual Symposium, November 14, 2006, Washington DC<br />
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]<br />
<br />
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm ↑]'''<br />
*AMIA Annual Symposium, November 12, 2006, Washington DC<br />
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)<br />
<br />
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''<br />
*AMIA Annual Symposium, November 11, 2006, Washington DC, <br />
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]<br />
<br />
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''<br />
*November 8, 2006, Baltimore, MD<br />
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)<br />
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication] <br />
<br />
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''<br />
*November 6-7, 2006, John Hopkins University, Baltimore<br />
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference<br />
<br />
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]''' <br />
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.<br />
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)<br />
<br />
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''<br />
*September 8-9, 2006, University of Washington, Seattle, WA<br />
*NCBO Dissemination Workshop<br />
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology] <br />
<br />
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]<br />
*August 27, 2006, Maastricht, Netherlands.<br />
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) <br />
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]<br />
<br />
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''<br />
*August 14-18, 2006. Stanford University<br />
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)<br />
<br />
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"<br />
*Jul 30-August 4, 2006, Fortaleza, Brazil.<br />
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. <br />
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK<br />
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;<br />
<br />
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''<br />
*July 23-26, 2006, Stanford, CA<br />
*NCBO Tutorial (Faculty: Chris Callendar)<br />
<br />
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''<br />
*July 17-19, 2006, NIH, Bethesda, MD<br />
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
<br />
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''<br />
*July 19, 2006, NIH, Bethesda, MD<br />
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]<br />
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]<br />
<br />
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''<br />
*May 21-24, 2006, Schloss Dagstuhl, Germany<br />
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German<br />
<br />
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ↑]'''<br />
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK<br />
*NCBO Dissemination Workshop<br />
<br />
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''<br />
*March 31-April 3, 2006, St. Croix<br />
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]<br />
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] <br />
<br />
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''<br />
*March 24-25, 2006, Stanford, CA<br />
*NCBO Dissemination Workshop<br />
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology <br />
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]<br />
<br />
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''<br />
*March 21-22, 2006, Gaitherburg, MD<br />
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting<br />
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]<br />
<br />
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''<br />
*March 6-7, 2006, Bethesda, MD<br />
*Presentation by Monte Westerfield on Animal Models and Ontologies<br />
<br />
'''BIRN ontology workshop'''<br />
*February 28-March 1, 2006, Stanford, CA<br />
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]<br />
*NCBO Dissemination Workshop<br />
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology<br />
<br />
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''<br />
*February 13-15, 2006, Philadelphia, PA<br />
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]<br />
<br />
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]<br />
*December 8-11, 2005, Asilomar, CA<br />
*Attending: Sima Misra, Chris Mungall, Monte Westerfield<br />
<br />
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑] <br />
*Nov. 19-20, 2005, Cold Spring Harbor, NY<br />
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield <br />
<br />
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*October 28, 2005, Buffalo, NY<br />
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider<br />
<br />
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]''' <br />
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)<br />
*October 28, 2005, Buffalo, NY<br />
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]</div>Phismith