Phismith: New page: '''Infectious Disease Ontology Kick-off Workshop and Public Meeting at Cold Spring Harbor Laboratories''' The Infectious Disease Ontology Workshop and Meeting (see link below under "Past ...

2010-05-11T18:29:36Z

New page: '''Infectious Disease Ontology Kick-off Workshop and Public Meeting at Cold Spring Harbor Laboratories''' The Infectious Disease Ontology Workshop and Meeting (see link below under "Past ...

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'''Infectious Disease Ontology Kick-off Workshop and Public Meeting at Cold Spring Harbor Laboratories'''

The Infectious Disease Ontology Workshop and Meeting (see link below under "Past Meetings") were intended to serve as both a training workshop for participants and a forum through which to establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The workshop and meeting were supported by the [http://www.bwfund.org Burroughs Wellcome Fund].

Training Workshop on Infectious Disease Ontology, Cold Spring Harbor Laboratories, NY: September 19-20, 2007
* [http://ontology.buffalo.edu/ido/2007_CSHL_Workshop.pdf Background]
* [http://ontology.buffalo.edu/ido/2007_CSHL_Workshop.pdf Program]

Public Meeting, Cold Spring Harbor Laboratories, NY: September 21, 2007
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]

''Report''

*http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Infectious_Disease_Ontology_Meeting_Report.doc

''Slides''

September 19, 2007
* Morning Session 1 (Cowell): http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Introduction_to_the_Human_Immune_System.ppt
* Morning Session 2 (Cowell): http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Introduction_to_Microbial_Pathogenesis.ppt
* Afternoon and Evening Sessions (Smith): http://ontology.buffalo.edu/bio/IDO/

September 21, 2007
*Topics in Infectious Disease Research
**Stefan Kaufmann: [http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Kaufmann_Infectious_Disease_Ontology_Meeting.ppt Global Threats Need Global Research Efforts: The Example of Tuberculosis]
**Ronald Veazey: Utility of Nonhuman Primates for Examining Transmission and Pathogenesis of HIV Infection
*Ontologies and their Application to Infectious Disease
**Steve Gordon: Surgical Endocarditis: Bringing Ontology into the Operating Room
**Michael Ashburner: [http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Ashburner_Infectious_Disease_Ontology_Meeting.ppt Ontologies for Biomedicine: The GO Experience]
**Lynn Schriml: The GEMINA Information Resource
*Ontology and the Future of Infectious Disease Research (Panel Session)
**Cowell: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Cowell_Infectious_Disease_Ontology_Panel.ppt
**Scheuermann: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Scheuermann_Infectious_Disease_Ontology_Panel.ppt
**Stein: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Stein_Infectious_Disease_Ontology_Panel.ppt

''Software Downloads''
* Download the OBO-Edit ontology editor: http://oboedit.org/
* Download the Protege OWL ontology editor: http://protege.stanford.edu/download/download.html
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/
* The Protege developers have created a short, helpful guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html

'''Workshop on the Ontology of Diseases, November 6-7, 2006'''

* [http://bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases Workshop on Ontology of Diseases]. Links to presentations at this meeting:
** Kent Spackman: SNOMED CT [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/spackman.ppt Slides]
** Barry Smith: What a Disease Ontology is for [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Smith.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Smith.WMA Audio]
**Neil Williams: The Ontology of Powers, Dispositions and Tendencies [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Williams.ppt Slides]
** Louis J. Goldberg: Networks and the Ontology of Disease [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Goldberg.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Goldberg.WMA Audio]
** Werner Ceusters: The Ontology of Diagnosis: [http://www.org.buffalo.edu/RTU/papers/WhatIsaDiagnosis.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Ceusters.WMA Audio]
** Chris Mungall: DO and the OBO Foundry [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/mungall.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Mungall.WMA Audio]

IDO Kick-Off Meeting - Revision history

Phismith: New page: '''Infectious Disease Ontology Kick-off Workshop and Public Meeting at Cold Spring Harbor Laboratories''' The Infectious Disease Ontology Workshop and Meeting (see link below under "Past ...