RDF in BioPortal - Revision history

Graybeal: /* SPARQL Endpoint */ added check tags

2016-07-10T05:07:43Z

SPARQL Endpoint: added check tags

2016-07-10T04:45:37Z

SPARQL Endpoint

2016-07-10T04:41:01Z

Accessing RDF content: formatting

2016-07-10T04:39:12Z

2010-08-25T19:47:43Z

Accessing RDF content

2010-08-25T19:39:25Z

Sample Queries

2010-08-25T19:32:29Z

List all named graphs

2010-08-25T19:28:18Z

SPARQL Endpoint

2010-08-25T19:27:16Z

Sample Queries

2010-08-25T19:24:39Z

Sample Queries

@@ Line 52: / Line 52: @@
 The BioPortal [http://sparql.bioontology.org SPARQL Endpoint] currently uses the [http://www.mulgara.org Mulgara] RDF store.  For more information, please see the [http://www.mulgara.org/trac/wiki Mulgara documentation].
-{{^|@CheckLinks, @CheckReality}}
+<small style="font-size:10%; color:lightgray">√Link √Info</small>
 == Sample Queries ==

@@ Line 52: / Line 52: @@
 The BioPortal [http://sparql.bioontology.org SPARQL Endpoint] currently uses the [http://www.mulgara.org Mulgara] RDF store.  For more information, please see the [http://www.mulgara.org/trac/wiki Mulgara documentation].
-<!-- @CheckLinks -->
+{{^|@CheckLinks, @CheckReality}}
 == Sample Queries ==

@@ Line 27: / Line 27: @@
 There are two ways to access the RDF content that we generate for BioPortal ontologies and their terms:
 # Use the [[#SPARQL_Endpoint | SPARQL Endpoint]].
-# Use the [http://www.bioontology.org/wiki/index.php/NCBO_REST_services#RDF_Term_Service RDF Term Service] to get an RDF snippet for a single term or several terms and the
+# Use the [http://www.bioontology.org/wiki/index.php/NCBO_REST_services#RDF_Term_Service RDF Term Service] to get an RDF snippet for a single term or several terms and the [http://www.bioontology.org/wiki/index.php/NCBO_REST_services#RDF_Download_Service RDF Download Service] to download the whole ontology in RDF. Note that the second service will provide only some basic information about each term, not all the relations that are defined in the ontology.
 = Content of the RDF graph =

← Older revision		Revision as of 04:39, 10 July 2016
Line 53:		Line 53:

	The BioPortal [http://sparql.bioontology.org SPARQL Endpoint] currently uses the [http://www.mulgara.org Mulgara] RDF store. For more information, please see the [http://www.mulgara.org/trac/wiki Mulgara documentation].		The BioPortal [http://sparql.bioontology.org SPARQL Endpoint] currently uses the [http://www.mulgara.org Mulgara] RDF store. For more information, please see the [http://www.mulgara.org/trac/wiki Mulgara documentation].
		+	<!-- @CheckLinks -->
		+	<!-- @CheckReality -->

	== Sample Queries ==		== Sample Queries ==

@@ Line 26: / Line 26: @@
 There are two ways to access the RDF content that we generate for BioPortal ontologies and their terms:
-# Use the [[#SPARQL_Endpoint | SPARQL Endpoint]]
+# Use the [[#SPARQL_Endpoint | SPARQL Endpoint]].
 # Use the [http://www.bioontology.org/wiki/index.php/NCBO_REST_services#RDF_Term_Service RDF Term Service] to get an RDF snippet for a single term or several terms and the
 [http://www.bioontology.org/wiki/index.php/NCBO_REST_services#RDF_Download_Service RDF Download Service] to download the whole ontology in RDF. Note that the second service will provide only some basic information about each term, not all the relations that are defined in the ontology.

@@ Line 79: / Line 79: @@
 === Filter for a specific object ===
 Graph URI (e.g., NEMO):
 <pre>
@@ Line 95: / Line 97: @@
 === List all triples ===
 Graph URI (e.g., NEMO):
 <pre>
@@ Line 108: / Line 112: @@
 === List all subclass relationships ===
 Graph URI (e.g., NEMO):
 <pre>
@@ Line 121: / Line 127: @@
 === List properties of each class ===
 Graph URI (e.g., NEMO):
 <pre>

@@ Line 58: / Line 58: @@
 === List all named graphs ===
- For every BioPortal ontology, list its named graph, display label, version id, virtual id and format.
+For every BioPortal ontology, list its named graph, display label, version id, virtual id and format.
 Graph URI:

@@ Line 55: / Line 55: @@
 == Sample Queries ==
-Using the [http://sparql.bioontology.org/webui/ SPARQL Endpoint WebUI], paste the following queries into the appropriate text box and press "Submit Query":
+Using the [http://sparql.bioontology.org/webui/ SPARQL Endpoint WebUI], paste the following queries into the appropriate text box and press "Submit Query."  For several of the examples below, we use the NEMO ontology as an example.  Using the "List all named graphs" query example, please find the named graph for your ontology of interest and substitute appropriately.
 === List all named graphs ===