XP:Main Page - Revision history

Cjm: /* Resources */

2008-05-19T07:13:43Z

Resources

Cjm: /* Downloading and using */

2007-07-20T20:53:42Z

Downloading and using

Cjm at 20:49, 20 July 2007

2007-07-20T20:49:51Z

Cjm at 20:49, 20 July 2007

2007-07-20T20:49:26Z

Cjm at 00:43, 11 April 2007

2007-04-11T00:43:29Z

Cjm at 00:22, 11 April 2007

2007-04-11T00:22:54Z

Cjm at 00:22, 11 April 2007

2007-04-11T00:22:16Z

Cjm at 22:54, 25 January 2007

2007-01-25T22:54:36Z

Cjm at 00:14, 3 November 2006

2006-11-03T00:14:49Z

Cjm at 01:33, 29 August 2006

2006-08-29T01:33:04Z

New page

This subwiki is for the discussion and coordination of 'cross-products' between OBO Ontologies.

The majority of the work done so far has been in the GO. See the BBOP wiki page for coordinating efforts on logical definitions for GO terms that refer to cell types:
* http://berkeleybop.org/mediawiki/index.php/GO:Logical_Definitions
this page also has a summary of other potnential OBO Foundry cross-products

The sequence ontology already has intra-ontology cross products (also done as part of GO Consortium efforts):
http://www.bioontology.org/wiki/index.php/SO:Composite_Terms

@@ Line 21: / Line 21: @@
 == Resources ==
-The majority of the work done so far has been in the GO. See the BBOP wiki page for coordinating efforts on logical definitions for GO terms that refer to cell types:
+The majority of the work done so far has been in the GO.
-* http://wiki.geneontology.org/index.php/Logical_Definitions
+* http://wiki.geneontology.org/index.php/Category:Cross_Products
 The sequence ontology already has intra-ontology cross products (also done as part of GO Consortium efforts):

← Older revision		Revision as of 20:53, 20 July 2007
Line 41:		Line 41:

	* http://www.berkeleybop.org/obol		* http://www.berkeleybop.org/obol
		+
		+	Many of the xp definitions in the above make use relations in the
		+	[[http://www.obofoundry.org/cgi-bin/detail.cgi?id=ro_proposed ro_proposed]] holding area for the relations ontology

@@ Line 13: / Line 13: @@
 etc
-The term "cross-product" comes from Hill et al's work on GO (http://www.bioontology.org/wiki/index.php?title=XP:Main_Page&action=edit), which proposed rational combination of basic process terms with terms from anatomical ontologies. The Manchester GONG Project (http://gong.man.ac.uk/) proposed the use of OWL to create logical class expressions for GO terms, and the [http://www.berkeleybop.org/obol Obol] project set about trying to reverse engineer these logical definitions for existing OBO ontologies. Both these efforts placed importance on the relations used in the logical definition/cross product, spurring the development of the [http://www.obofoundry.org/ro OBO Relation Ontology].
+The term "cross-product" comes from Hill et al's work on GO, which proposed rational combination of basic process terms with terms from anatomical ontologies. The Manchester GONG Project (http://gong.man.ac.uk/) proposed the use of OWL to create logical class expressions for GO terms, and the [http://www.berkeleybop.org/obol Obol] project set about trying to reverse engineer these logical definitions for existing OBO ontologies. Both these efforts placed importance on the relations used in the logical definition/cross product, spurring the development of the [http://www.obofoundry.org/ro OBO Relation Ontology].
 There are various ongoing efforts to maintain these logical definitions. In some circumstance it is beneficial to employ "post-composition", in which case the composition is made at annotation time, rather than prior to ontology deployment. From a logical point of view, these are equivalent.

@@ Line 32: / Line 32: @@
 * [[PATO:Pre_vs_Post_Coordinating]]
-For a list of cross-products plus availability in OBO and OWL format, see
+== Downloading and using ==
 * http://www.berkeleybop.org/ontologies#logical_definitions
-Obol project:
+For a wider list of automatically generated cross-products, see the Obol pages:
 * http://www.berkeleybop.org/obol

@@ Line 1: / Line 1: @@
 This subwiki is for the discussion and coordination of 'cross-products' between OBO Ontologies, primarily those in the [[OBO Foundry]].
 The majority of the work done so far has been in the GO. See the BBOP wiki page for coordinating efforts on logical definitions for GO terms that refer to cell types:
@@ Line 15: / Line 35: @@
 * http://www.berkeleybop.org/ontologies#logical_definitions
-Scroll down to "mappings and bridges"
+Obol project:

@@ Line 3: / Line 3: @@
 The majority of the work done so far has been in the GO. See the BBOP wiki page for coordinating efforts on logical definitions for GO terms that refer to cell types:
-* http://berkeleybop.org/mediawiki/index.php/GO:Logical_Definitions
+* http://wiki.geneontology.org/index.php/Logical_Definitions
 this page also has a summary of other potnential OBO Foundry cross-products

@@ Line 7: / Line 7: @@
 The sequence ontology already has intra-ontology cross products (also done as part of GO Consortium efforts):
-[[SO:Composite_Terms]]
+* [[SO:Composite_Terms]]
 For cross-products involving phenotype ontologies, see:
-[[PATO:Pre_vs_Post_Coordinating]]
+* [[PATO:Pre_vs_Post_Coordinating]]