Difference between revisions of "Category:NCBO Virtual Machine Image"
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Please see below for how-to documentation for managing the software and running data population for Annotator and Resource Index. | Please see below for how-to documentation for managing the software and running data population for Annotator and Resource Index. | ||
| + | |||
| + | == Getting Started == | ||
| + | * The default hostname for the machine is ncbobioportal | ||
| + | * '''Change default passwords''' | ||
| + | ** Operating System | ||
| + | *** Username: <code>root</code> | ||
| + | *** Password: <code>changemeNOW</code> | ||
| + | ** BioPortal Admin User | ||
| + | *** Username: <code>admin</code> | ||
| + | *** Password: <code>changeme</code> | ||
| + | * Add an ontology using the BioPortal Admin User here: http://ncbobioportal/ontologies/new | ||
| + | ** BioPortal Ontology Services will automatically process new ontologies every hour at 30 minutes past the hour. This processing includes: | ||
| + | *** Parsing any new, unparsed ontologies | ||
| + | *** Calculating a set of metrics for these ontologies | ||
| + | *** Indexing these ontologies for use with search | ||
| + | * Parsing, indexing, metrics calculation, and ontology deletion can all be manually triggered or re-triggered using the BioPortal Admin user interface, which is available here: http://ncbobioportal/bioportal_admin | ||
Revision as of 19:03, 22 October 2010
The NCBO Virtual Machine Image contains a pre-installed, pre-configured version of commonly used NCBO software. The image was created using VMWare and is available for download from NCBO ADD_DOWNLOAD_LOCATION_HERE.
The following software is included on the image:
- BioPortal Ontology Services (BioPortal Core)
- BioPortal Web User Interface (including ontology visualization, Flex widgets, Annotator and Resource Index UIs)
- BioPortal Admin (a UI for administering BioPortal Ontology Services)
- Annotator
- Resource Index
Please see below for how-to documentation for managing the software and running data population for Annotator and Resource Index.
Getting Started
- The default hostname for the machine is ncbobioportal
- Change default passwords
- Operating System
- Username:
root - Password:
changemeNOW
- Username:
- BioPortal Admin User
- Username:
admin - Password:
changeme
- Username:
- Operating System
- Add an ontology using the BioPortal Admin User here: http://ncbobioportal/ontologies/new
- BioPortal Ontology Services will automatically process new ontologies every hour at 30 minutes past the hour. This processing includes:
- Parsing any new, unparsed ontologies
- Calculating a set of metrics for these ontologies
- Indexing these ontologies for use with search
- BioPortal Ontology Services will automatically process new ontologies every hour at 30 minutes past the hour. This processing includes:
- Parsing, indexing, metrics calculation, and ontology deletion can all be manually triggered or re-triggered using the BioPortal Admin user interface, which is available here: http://ncbobioportal/bioportal_admin
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