Difference between revisions of "Immunology Ontologies and Their Applications in Processing Clinical Data"
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''Day 1: Monday, June 11, 2012'' | ''Day 1: Monday, June 11, 2012'' | ||
| − | :Ontologies to Support Research in Immunology and Infectious Disease | + | :'''An Overview of Ontologies to Support Research in Immunology and Infectious Disease''' |
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::Representing epitope mapping experiments for IEDB | ::Representing epitope mapping experiments for IEDB | ||
| − | + | ::''Afternoon: IDO and Its Extensions'' | |
| − | ::Afternoon: IDO and Its Extensions | ||
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:Ideas: | :Ideas: | ||
| + | ''Day 2: Tuesday, June 12, 2012'' | ||
| − | '' | + | :'''Practical Applications of Ontologies in Clinical Research''' |
:9:00am - 5:00pm | :9:00am - 5:00pm | ||
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''Day 3: Wednesday, June 13, 2012'' | ''Day 3: Wednesday, June 13, 2012'' | ||
Revision as of 21:24, 21 February 2012
The National Center for Biomedical Ontology in collaboration with the Protein Ontology (PRO) and the Infectious Disease Ontology (IDO) Consortia will host a three-day dissemination workshop in Buffalo, NY on June 11-13, 2012.
Goals
Provisional goals of the meeting are:
To identify and coordinate activities on-going in the field of immunology ontology, with special attention to the use of ontologies to support clinical data analysis in flow cytometry and other fields.
Draft Schedule
Day 1: Monday, June 11, 2012
- An Overview of Ontologies to Support Research in Immunology and Infectious Disease
- 10:00am-5:00pm
- Morning: GO, PRO, CL, IO, IEO
- Ideas:
- Immune pathway representations
- Representation of cells used in experiments such as: PBMCs, splenocytes, adherent cells
- Representation of immunology experiments using OBI
- Representing epitope mapping experiments for IEDB
- Afternoon: IDO and Its Extensions
- Ideas:
Day 2: Tuesday, June 12, 2012
- Practical Applications of Ontologies in Clinical Research
- 9:00am - 5:00pm
Day 3: Wednesday, June 13, 2012
- Practical Applications of Ontologies in Flow Cytometry Research
- 9:00am - 4:00pm
Relevant ontology efforts
- GO-IP Gene Ontology -- Immunological Process (Alex Diehl)
- CL Cell ontology immune branches (e.g. for dendritic cells)
- PRO Protein Ontology
- IO Immunology Ontology (Lindsay Cowell and Alex Diehl)
- IEO Immune Epitope Ontology (Bjoern Peters)
- MHC Major Histocompatibility Complex Ontology (Bjoern Peters)
- OGMS Ontology for General Medical Science (Albert Goldfain)
- IDO Infectious Disease Ontology (Lindsay Cowell)
- Vaccine Ontology
- AO Allergy Ontology (Alex C. Yu)
- ND Neurological Disease Ontology (Alex Diehl)
Participants will include
- Ryan Brinkman (University of British Columbia, June 11-12)
- Cliburn Chan (Duke University, June 11-12)
- Lindsay Cowell (University of Texas Southwestern Medical Center)
- Peter d'Eustachio (New York University, June 11-12)
- Alex Diehl (University at Buffalo)
- Albert Goldfain (University at Buffalo, Syracuse University and Blue Highway, Inc.)
- Anna Maria Masci (Duke University)
- Darren Natale (Georgetown University)
- Bjoern Peters, (University of California at San Diego)
- Alan Ruttenberg (University at Buffalo)
- Richard Scheuermann (University of Texas Southwestern Medical Center)
- Barry Smith (University at Buffalo)
- Alex C. Yu (University at Buffalo)
- Cathy Yu (University of Delaware, Georgetown University)