Difference between revisions of "Infectious Disease Ontology"

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== News ==
 
== News ==
  
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In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki.  The ontology can be viewed here.
 
In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki.  The ontology can be viewed here.
  
'''Recommended Background Reading'''
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== Recommended Background Reading ==
 
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically  
 
* http://www.ifomis.uni-saarland.de/projects/bfo/manual/: Comprehensive introduction to ontology in general and the Basic Formal Ontology specifically  
 
* Common Errors in OWL: http://www.co-ode.org/resources/papers/CommonErrorsInOWL.pdf
 
* Common Errors in OWL: http://www.co-ode.org/resources/papers/CommonErrorsInOWL.pdf
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*  Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology
 
*  Ontology Development for Biological Systems: immunology: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/7/913: Revisions to GO BP relevant to immunology
  
'''Downloads'''
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== Downloads ==
 
* Download Protege OWL: http://protege.stanford.edu/download/download.html  
 
* Download Protege OWL: http://protege.stanford.edu/download/download.html  
 
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"
 
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"
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* The Protege developers have created a short, helpful guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html  
 
* The Protege developers have created a short, helpful guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html  
  
'''Meetings'''
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== Meetings ==
  
 
September 19-20, 2007
 
September 19-20, 2007
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* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]
 
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]
  
 
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== Past Meetings ==
'''Past Meetings'''
+
  
 
November 6-7, 2006
 
November 6-7, 2006
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Chris Mungall: DO and the OBO Foundry [[http://ontology.buffalo.edu/medo/DiseaseOntology/2006/mungall.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Mungall.WMA Audio]
 
Chris Mungall: DO and the OBO Foundry [[http://ontology.buffalo.edu/medo/DiseaseOntology/2006/mungall.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Mungall.WMA Audio]
  
'''Links'''
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== Links ==
  
 
* [http://obofoundry.org The OBO Foundry]
 
* [http://obofoundry.org The OBO Foundry]

Revision as of 08:47, 11 September 2007

Contents

News

The upcoming Infectious Disease Ontology Workshop (see link below under "Meetings") is intended to be both a training workshop for participants and a forum through which we can establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The current agenda for the workshop can be viewed here.

In preparation for the workshop, we have prepared a draft infectious disease ontology and hope that workshop attendees will take time to comment on the ontology in advance of the workshop using the discussion page of this wiki. The ontology can be viewed here.

Recommended Background Reading

Downloads

Meetings

September 19-20, 2007

September 21, 2007

Past Meetings

November 6-7, 2006

Chris Mungall: DO and the OBO Foundry [Slides Audio

Links

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