Difference between revisions of "Infectious Disease Ontology"

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* http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Infectious_Disease_Ontology_Meeting_Report.doc
 
* http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Infectious_Disease_Ontology_Meeting_Report.doc
  
'''Workshop Slides'''
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'''''Slides'''''
  
 
September 19, 2007
 
September 19, 2007
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* Morning Session 2 (Cowell): http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Introduction_to_Microbial_Pathogenesis.ppt
 
* Morning Session 2 (Cowell): http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Introduction_to_Microbial_Pathogenesis.ppt
 
* Afternoon and Evening Sessions (Smith): http://ontology.buffalo.edu/bio/IDO/
 
* Afternoon and Evening Sessions (Smith): http://ontology.buffalo.edu/bio/IDO/
 
'''Meeting Slides'''
 
  
 
September 21, 2007
 
September 21, 2007
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**Stein: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Stein_Infectious_Disease_Ontology_Panel.ppt
 
**Stein: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Stein_Infectious_Disease_Ontology_Panel.ppt
  
'''Recommended Background Reading'''
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'''''Recommended Background Reading'''''
 
* For a comprehensive introduction to ontology in general and the Basic Formal Ontology specifically, see http://www.ifomis.uni-saarland.de/projects/bfo/manual/
 
* For a comprehensive introduction to ontology in general and the Basic Formal Ontology specifically, see http://www.ifomis.uni-saarland.de/projects/bfo/manual/
 
* For an explanation of the necessity of logic-based relations for automatic reasoning over ontologies, see [[Image:Relations_in_anatomical_ontologies_sa.pdf‎]]
 
* For an explanation of the necessity of logic-based relations for automatic reasoning over ontologies, see [[Image:Relations_in_anatomical_ontologies_sa.pdf‎]]
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* For an introduction to microbial pathogenisis, see http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Pathogenicity_of_Micro-Organisms.pdf
 
* For an introduction to microbial pathogenisis, see http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Pathogenicity_of_Micro-Organisms.pdf
  
'''Software Downloads'''
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'''''Software Downloads'''''
 
* Download the OBO-Edit ontology editor: http://oboedit.org/
 
* Download the OBO-Edit ontology editor: http://oboedit.org/
 
* Download the Protege OWL ontology editor: http://protege.stanford.edu/download/download.html  
 
* Download the Protege OWL ontology editor: http://protege.stanford.edu/download/download.html  

Revision as of 16:16, 31 May 2008

Contents

New Email List

Please subscribe to the Infectious Disease Ontology email list. Anyone can subscribe, and anyone can email the list. We plan to use the email list to discuss the addition of new terms and proposed changes to the current ontology. To subscribe, visit https://lists.duke.edu/sympa/. To email the list, write to ido@duke.edu.

Beginnings of an Infectious Disease Ontology

At the recent Infectious Disease Ontology Workshop (see below), we began preliminary work on a draft infectious disease ontology. OBO edit and Protege OWL versions of the ontology are available for download. Please send comments and suggestions to ido@duke.edu.

Accessible data to test the ontology, existing ontologies of related interest can be found here: Toolbox

Infectious Disease Ontology Meeting in Buffalo (September 16 - 17, 2008)

Details available here.

Past Meetings

Infectious Disease Ontology Kick-off Workshop (September 19 - 20, 2007) and Meeting (September 21, 2007)

The Infectious Disease Ontology Workshop and Meeting (see link below under "Past Meetings") were intended to serve as both a training workshop for participants and a forum through which to establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The workshop and meeting were supported by the Burroughs Wellcome Fund.

September 21, 2007

September 19-20, 2007

Report

Slides

September 19, 2007

September 21, 2007

Recommended Background Reading

Software Downloads

Workshop on the Ontology of Diseases, November 6-7, 2006

Links

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