Difference between revisions of "Infectious Disease Ontology"

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== Past Meetings ==
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== Meetings ==
  
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== [http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_2008 Infectious Disease Ontology Meeting], in Buffalo (September 16 - 17, 2008)==
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'''2007'''
 
'''Infectious Disease Ontology Kick-off Workshop and Public Meeting at Cold Spring Harbor Laboratories'''
 
'''Infectious Disease Ontology Kick-off Workshop and Public Meeting at Cold Spring Harbor Laboratories'''
  
The Infectious Disease Ontology Workshop and Meeting (see link below under "Past Meetings") were intended to serve as both a training workshop for participants and a forum through which to establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO).  The workshop and meeting were supported by the [http://www.bwfund.org Burroughs Wellcome Fund].
 
 
Training Workshop on Infectious Disease Ontology, Cold Spring Harbor Laboratories, NY: September 19-20, 2007
 
* [http://ontology.buffalo.edu/ido/2007_CSHL_Workshop.pdf Background]
 
* [http://ontology.buffalo.edu/ido/2007_CSHL_Workshop.pdf Program]
 
 
Public Meeting, Cold Spring Harbor Laboratories, NY: September 21, 2007
 
* [http://meetings.cshl.edu/courses/m-ontol07.html Infectious Disease: A Challenge for Biomedical Informatics]
 
 
''Report''
 
 
*http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Infectious_Disease_Ontology_Meeting_Report.doc
 
 
''Slides''
 
 
September 19, 2007
 
* Morning Session 1 (Cowell): http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Introduction_to_the_Human_Immune_System.ppt
 
* Morning Session 2 (Cowell): http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Introduction_to_Microbial_Pathogenesis.ppt
 
* Afternoon and Evening Sessions (Smith): http://ontology.buffalo.edu/bio/IDO/
 
 
September 21, 2007
 
*Topics in Infectious Disease Research
 
**Stefan Kaufmann: [http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Kaufmann_Infectious_Disease_Ontology_Meeting.ppt Global Threats Need Global Research Efforts: The Example of Tuberculosis]
 
**Ronald Veazey: Utility of Nonhuman Primates for Examining Transmission and Pathogenesis of HIV Infection
 
*Ontologies and their Application to Infectious Disease
 
**Steve Gordon: Surgical Endocarditis: Bringing Ontology into the Operating Room
 
**Michael Ashburner: [http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Ashburner_Infectious_Disease_Ontology_Meeting.ppt Ontologies for Biomedicine: The GO Experience]
 
**Lynn Schriml: The GEMINA Information Resource
 
*Ontology and the Future of Infectious Disease Research (Panel Session)
 
**Cowell: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Cowell_Infectious_Disease_Ontology_Panel.ppt
 
**Scheuermann: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Scheuermann_Infectious_Disease_Ontology_Panel.ppt
 
**Stein: http://www.duke.edu/~lgcowell/IDO_Workshop_Files/Stein_Infectious_Disease_Ontology_Panel.ppt
 
 
''Software Downloads''
 
* Download the OBO-Edit ontology editor: http://oboedit.org/
 
* Download the Protege OWL ontology editor: http://protege.stanford.edu/download/download.html
 
* Protege OWL contains a very useful tutorial, you can access it by opening Protege OWL and looking under "Help"
 
* Download Pellet (a reasoner for OWL): http://pellet.owldl.com/
 
* The Protege developers have created a short, helpful guide to installing Pellet and making sure that Pellet is running in conjunction with Protege OWL: http://protege.stanford.edu/shortcourse/protege/200703/prepare.html
 
 
'''Workshop on the Ontology of Diseases, November 6-7, 2006'''
 
  
* [http://bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases Workshop on Ontology of Diseases]. Links to presentations at this meeting:
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[[IDO Kick-Off Meeting]]
** Kent Spackman: SNOMED CT [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/spackman.ppt Slides]
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** Barry Smith: What a Disease Ontology is for [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Smith.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Smith.WMA Audio]
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**Neil Williams: The Ontology of Powers, Dispositions and Tendencies [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Williams.ppt Slides]
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** Louis J. Goldberg: Networks and the Ontology of Disease [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Goldberg.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Goldberg.WMA Audio]
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** Werner Ceusters: The Ontology of Diagnosis: [http://www.org.buffalo.edu/RTU/papers/WhatIsaDiagnosis.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Ceusters.WMA Audio]
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** Chris Mungall: DO and the OBO Foundry [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/mungall.ppt Slides] [http://ontology.buffalo.edu/medo/DiseaseOntology/2006/Mungall.WMA Audio]
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== Past Meetings ==
 
== Past Meetings ==

Revision as of 10:29, 11 May 2010

Contents

Please Visit the Main IDO Website

The main IDO website is http://www.infectiousdiseaseontology.org.

Email List

Please subscribe to the Infectious Disease Ontology email list. Anyone can subscribe, and anyone can email the list. We plan to use the email list to discuss the addition of new terms and proposed changes to the current ontology. To subscribe, visit https://lists.duke.edu/sympa/. To email the list, write to ido@duke.edu.

Medinfo 2010 Workshop

There will be an IDO workshop at the 13th World Congress on Medical and Health Informatics (Medinfo 2010). A separate wiki for this workshop can be found here: Infectious Disease Ontology Workshop - Medinfo 2010

Beginnings of an Infectious Disease Ontology

At the recent Infectious Disease Ontology Workshop (see below), we began preliminary work on a draft infectious disease ontology. OBO edit and Protege OWL versions of the ontology are available for download. Please send comments and suggestions to ido@duke.edu.

Accessible data to test the ontology, existing ontologies of related interest can be found here: Toolbox

Most current version of the ontology can be found here.


Meetings

Infectious Disease Ontology Meeting, in Buffalo (September 16 - 17, 2008)

2007 Infectious Disease Ontology Kick-off Workshop and Public Meeting at Cold Spring Harbor Laboratories


IDO Kick-Off Meeting

Past Meetings

Infectious Disease Ontology Kick-off Workshop (September 19 - 20, 2007) and Meeting (September 21, 2007)

The Infectious Disease Ontology Workshop and Meeting (see link below under "Past Meetings") were intended to serve as both a training workshop for participants and a forum through which to establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The workshop and meeting were supported by the Burroughs Wellcome Fund.

Training Workshop on Infectious Disease Ontology, Cold Spring Harbor Laboratories, NY: September 19-20, 2007

Public Meeting, Cold Spring Harbor Laboratories, NY: September 21, 2007

Report

Slides

September 19, 2007

September 21, 2007

Software Downloads

Workshop on the Ontology of Diseases, November 6-7, 2006


To: "Smith, Barry" <phismith@buffalo.edu> Subject: save to

 http://www.bioontology.org/wiki/index.php?title=Infectious_Disease_Onto
logy&action=edit&section=6

Past Meetings

Infectious Disease Ontology Kick-off Workshop (September 19 - 20, 2007) and Meeting (September 21, 2007)

The Infectious Disease Ontology Workshop and Meeting (see link below under "Past Meetings") were intended to serve as both a training workshop for participants and a forum through which to establish a community for development, maintenance, and use of the Infectious Disease Ontology (IDO). The workshop and meeting were supported by the Burroughs Wellcome Fund.

Training Workshop on Infectious Disease Ontology, Cold Spring Harbor Laboratories, NY: September 19-20, 2007

Public Meeting, Cold Spring Harbor Laboratories, NY: September 21, 2007

Report

Slides

September 19, 2007

September 21, 2007

Software Downloads

Workshop on the Ontology of Diseases, November 6-7, 2006

Links

Recommended Background Reading

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