Difference between revisions of "Introduction to Bio-Ontologies"
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| − | On Sunday February 5 the Plant Ontology Consortium will host a tutorial on bio-ontologies | + | On Sunday, February 5, 2012 the [http://plantontology.org Plant Ontology Consortium] will host a tutorial on bio-ontologies at the New York Botanical Garden. |
| − | + | This tutorial is designed for biologists who have little or no experience with ontologies. It should be of interest to those who want to create their own ontology or make use of existing ontologies for data annotation. Although most of the examples will be drawn from the Plant Ontology, the methods described will be relevant to any domain. | |
| − | 9:30AM-11: | + | |
| + | 9AM-9:30AM Welcome and Introductions (Dennis Stevenson, Vice President for Laboratory Research, New York Botanical Gardens) | ||
| + | |||
| + | 9:30AM-11:15AM Introduction to Bio-Ontologies (Barry Smith) | ||
:What is an ontology and what is it for? | :What is an ontology and what is it for? | ||
:Ontology success stories in the life sciences | :Ontology success stories in the life sciences | ||
| Line 9: | Line 12: | ||
:How to build your first ontology | :How to build your first ontology | ||
| − | 11: | + | 11:30AM-12:30PM Introduction to the Plant Ontology (Ramona Walls) |
| − | : | + | :What is the Plant Ontology and what is it for? |
| − | :Plant Ontology | + | :How the Plant Ontology is structured: anatomy and development stages |
| − | :Plant Ontology definitions | + | :Plant Ontology relations and definitions |
| − | :Neighboring ontologies of Traits (TO) and Phenotypes (PATO) | + | :Neighboring ontologies of the PO: Traits (TO) and Phenotypes (PATO) |
:Different types of plant data made available through the Plant Ontology | :Different types of plant data made available through the Plant Ontology | ||
| − | This tutorial is open to the public. If you are interested in attending please contact | + | This tutorial is open to the public. If you are interested in attending please contact [mailto:rwalls@nybg.org Ramona Walls] before February 1, 2012. |
| + | |||
| + | The [http://www.nybg.org/ New York Botanical Garden] us located in the Bronx, NY, and is easily reached by the [http://www.nybg.org/visit/directions.php#public Metro-North Railraod or other means of transportation]. | ||
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| + | |||
| + | ==Suggested Reading== | ||
| + | If you would like to read about bio-ontologies before the workshop, check out the following publications: | ||
| + | |||
| + | [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Smith et al. 2007], "The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration". | ||
| + | |||
| + | [http://www.plantphysiol.org/cgi/content/full/143/2/587 Ilic et al. 2007], "The Plant Structure Ontology, a unified vocabulary of anatomy and morphology of a flowering plant". | ||
| + | |||
| + | [http://nar.oxfordjournals.org/cgi/content/full/36/suppl_1/D449 Avraham et al. 2007], "The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations". | ||
Revision as of 08:29, 4 January 2012
On Sunday, February 5, 2012 the Plant Ontology Consortium will host a tutorial on bio-ontologies at the New York Botanical Garden.
This tutorial is designed for biologists who have little or no experience with ontologies. It should be of interest to those who want to create their own ontology or make use of existing ontologies for data annotation. Although most of the examples will be drawn from the Plant Ontology, the methods described will be relevant to any domain.
9AM-9:30AM Welcome and Introductions (Dennis Stevenson, Vice President for Laboratory Research, New York Botanical Gardens)
9:30AM-11:15AM Introduction to Bio-Ontologies (Barry Smith)
- What is an ontology and what is it for?
- Ontology success stories in the life sciences
- The bio-ontologies landscape
- How to build your first ontology
11:30AM-12:30PM Introduction to the Plant Ontology (Ramona Walls)
- What is the Plant Ontology and what is it for?
- How the Plant Ontology is structured: anatomy and development stages
- Plant Ontology relations and definitions
- Neighboring ontologies of the PO: Traits (TO) and Phenotypes (PATO)
- Different types of plant data made available through the Plant Ontology
This tutorial is open to the public. If you are interested in attending please contact Ramona Walls before February 1, 2012.
The New York Botanical Garden us located in the Bronx, NY, and is easily reached by the Metro-North Railraod or other means of transportation.
Suggested Reading
If you would like to read about bio-ontologies before the workshop, check out the following publications:
Smith et al. 2007, "The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration".
Ilic et al. 2007, "The Plant Structure Ontology, a unified vocabulary of anatomy and morphology of a flowering plant".
Avraham et al. 2007, "The Plant Ontology Database: a community resource for plant structure and development stages controlled vocabulary and annotations".