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| − | Welcome to the '''National Center for Biomedical Ontology (NCBO) public wiki'''. This wiki provides information about collaborative ontology development efforts, as well as user guides and technical documentation for software developed by | + | Welcome to the '''National Center for Biomedical Ontology (NCBO) public wiki'''. This wiki provides information about collaborative ontology development efforts, as well as user guides and technical documentation for software developed by NCBO. |
| − | Please visit our [http://www.bioontology.org main site] for more information about | + | Please visit our [http://www.bioontology.org main site] for more information about NCBO. |
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== Software == | == Software == | ||
| − | To follow is a list of software developed and maintained by | + | To follow is a list of software developed and maintained by NCBO: |
* [https://bioportal.bioontology.org BioPortal] - A web-based application for accessing and sharing biomedical ontologies | * [https://bioportal.bioontology.org BioPortal] - A web-based application for accessing and sharing biomedical ontologies | ||
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* [http://data.bioontology.org/documentation BioPortal REST API] - see a list of available endpoints with usage instructions | * [http://data.bioontology.org/documentation BioPortal REST API] - see a list of available endpoints with usage instructions | ||
* [[:Category:NCBO_Virtual_Appliance|BioPortal Virtual Appliance]] - read a getting started guide and installation instructions | * [[:Category:NCBO_Virtual_Appliance|BioPortal Virtual Appliance]] - read a getting started guide and installation instructions | ||
| − | * [[Using_NCBO_Technology_In_Your_Project|Using | + | * [[Using_NCBO_Technology_In_Your_Project|Using NCBO technologies in your project]] - get ideas for how to employ NCBO technologies in your website or application |
* [[SPARQL_BioPortal|BioPortal SPARQL Endpoint]] - read about programmatic submission of SPARQL queries and the named graph structure | * [[SPARQL_BioPortal|BioPortal SPARQL Endpoint]] - read about programmatic submission of SPARQL queries and the named graph structure | ||
* [[NCBO_Developer_Documentation|Developer documentation]] | * [[NCBO_Developer_Documentation|Developer documentation]] | ||
Revision as of 20:17, 17 November 2017
Welcome to the National Center for Biomedical Ontology (NCBO) public wiki. This wiki provides information about collaborative ontology development efforts, as well as user guides and technical documentation for software developed by NCBO.
Please visit our main site for more information about NCBO.
Software
To follow is a list of software developed and maintained by NCBO:
- BioPortal - A web-based application for accessing and sharing biomedical ontologies
- BioPortal REST API - A RESTful API to access BioPortal content
- BioPortal Virtual Appliance - Contains BioPortal and the BioPortal REST API, runs on Linux
- BioPortal SPARQL Endpoint - Access BioPortal content via SPARQL queries (obsolete)
Please refer to our release notes page for change logs.
Documentation
- BioPortal - get help with the user interface and instructions for commonly performed tasks
- BioPortal REST API - see a list of available endpoints with usage instructions
- BioPortal Virtual Appliance - read a getting started guide and installation instructions
- Using NCBO technologies in your project - get ideas for how to employ NCBO technologies in your website or application
- BioPortal SPARQL Endpoint - read about programmatic submission of SPARQL queries and the named graph structure
- Developer documentation
Ontology Development Projects
These are some of the ontology development projects that NCBO has participated in:
- Biomedical Resource Ontology
- Translational Medicine Ontology
- NanoParticle Ontology
- Phenotypic Quality Ontology
- OBO Relations Ontology
- Common Anatomy Reference Ontology
- Cell Ontology
- Sequence Types and Features Ontology
- Disease Ontology, and other ontologies pertaining to diseases and disorders
- Ontology of Clinical Investigation