Difference between revisions of "NCBO Annotator community"
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(New page: == Mouse Genome Informatics (MGI), The Jackson Laboratory == Contacts: mailto:judith.blake@jax.org Judith A. Blake and mailto:kgd@informatics.jax.org Karen Dowell === Use case ==...) |
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== Center for Computational Biology and Bioinformatics (CCBB), Indiana University == | == Center for Computational Biology and Bioinformatics (CCBB), Indiana University == | ||
| − | Contacts: [[mailto: | + | Contacts: [[mailto:sdmooney@iupui.edu Sean Mooney]] and [[mailto:peter@compbio.iupui.edu Peter H. Baenziger]] |
=== Use case === | === Use case === | ||
| Line 30: | Line 30: | ||
=== Ontologies used === | === Ontologies used === | ||
| + | |||
| + | * SNOMEDCT | ||
| + | * MeSH | ||
| + | * NCI | ||
| + | |||
| + | == Center for Computational Pharmacology (UCHSC) == | ||
| + | |||
| + | Contacts: [[mailto:Larry.Hunter@uchsc.edu Larry Hunter]] and [[mailto:William.Baumgartner@ucdenver.edu Bill Baumgartner]] | ||
| + | |||
| + | === Use case === | ||
| + | |||
| + | === Latest news === | ||
| + | |||
| + | === Ontologies used === | ||
| + | |||
| + | * GO (BP, MF, CC) | ||
| + | * BRENDA tissue / enzyme source (BTO) | ||
| + | * Cell Type (CL) | ||
| + | * Chemical entities of biological interest (ChEBI) | ||
| + | * Evidence codes (ECO) | ||
| + | * FMA | ||
| + | * Mammalian phenotype (MP) | ||
| + | * OBO relationship types (OBO_REL) | ||
| + | * Protein Ontology (PRO) | ||
| + | * Protein-protein Interaction (MI) | ||
| + | * Sequence Ontology (SO) | ||
| + | |||
| + | == Center for Computational Pharmacology (UCSF) == | ||
| + | |||
| + | Contacts: [[mailto:ida.sim@ucsf.edu Ida Sim]] and [[mailto:michael.bobak@ucsf.edu Michael Bobak]] | ||
| + | |||
| + | === Use case === | ||
| + | |||
| + | === Latest news === | ||
| + | |||
| + | === Ontologies used === | ||
| + | |||
| + | * Human disease | ||
| + | * Infectious disease | ||
| + | * GALEN | ||
| + | * UMLS | ||
| + | |||
| + | == Department of Biomedical Informatics (DBMI), University of Pittsburgh == | ||
| + | |||
| + | Contacts: [[mailto:CrowleyRS@upmc.edu Rebecca Crowley]] and [[mailto:mitchellkj@upmc.edu Kevin Mitchell]] | ||
| + | |||
| + | == Human and Molecular Genetics Center (HMGC), Medical College of Wisconsin == | ||
| + | |||
| + | Contacts: [[mailto:CrowleyRS@upmc.edu Simon Twigger]] and [[mailto:mitchellkj@upmc.edu Kevin Mitchell]] | ||
| + | • Twigger, (simont@hmgc.mcw.edu) | ||
Revision as of 14:09, 27 March 2009
Mouse Genome Informatics (MGI), The Jackson Laboratory
Contacts: [Judith A. Blake] and [Karen Dowell]
Use case
Latest news
Ontologies used
- Mouse gross anatomy and development (EMAP)
- Mouse adult gross anatomy (MA)
- Mouse pathology (MPATH)
- Mammalian phenotype (MP)
- Human disease (DOID)
- Human developmental anatomy – Timed version (EHDA)
- Human developmental anatomy – Abstract version (EHDAA)
- Biological process
- Cellular component
- Molecular function
- Mouse/Human Gene dictionary (JAXMGD)
Center for Computational Biology and Bioinformatics (CCBB), Indiana University
Contacts: [Sean Mooney] and [Peter H. Baenziger]
Use case
Latest news
Ontologies used
- SNOMEDCT
- MeSH
- NCI
Center for Computational Pharmacology (UCHSC)
Contacts: [Larry Hunter] and [Bill Baumgartner]
Use case
Latest news
Ontologies used
- GO (BP, MF, CC)
- BRENDA tissue / enzyme source (BTO)
- Cell Type (CL)
- Chemical entities of biological interest (ChEBI)
- Evidence codes (ECO)
- FMA
- Mammalian phenotype (MP)
- OBO relationship types (OBO_REL)
- Protein Ontology (PRO)
- Protein-protein Interaction (MI)
- Sequence Ontology (SO)
Center for Computational Pharmacology (UCSF)
Contacts: [Ida Sim] and [Michael Bobak]
Use case
Latest news
Ontologies used
- Human disease
- Infectious disease
- GALEN
- UMLS
Department of Biomedical Informatics (DBMI), University of Pittsburgh
Contacts: [Rebecca Crowley] and [Kevin Mitchell]
Human and Molecular Genetics Center (HMGC), Medical College of Wisconsin
Contacts: [Simon Twigger] and [Kevin Mitchell] • Twigger, (simont@hmgc.mcw.edu)