Difference between revisions of "NIAID Cell Ontology Workshop Agenda"
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''Note that the Agenda below reflects the timeline of the meeting as it actually occured ; the original Agenda is [[Media:NIAID_CL_Workshop_May_2008_Agenda.doc|here]].'' | ''Note that the Agenda below reflects the timeline of the meeting as it actually occured ; the original Agenda is [[Media:NIAID_CL_Workshop_May_2008_Agenda.doc|here]].'' | ||
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| − | + | == '''Agenda''' == | |
| − | + | '''''May 13: Adaptive Immune Cell Representation''''' | |
| − | + | 8:00 - 9:00am Registration/Coffee | |
| − | 9: | + | 9:00 - 9:10 Welcome, NIAID staff |
| − | + | 9:10 - 9:20 Brief introduction to the CL and its development, Dr. Alexander Diehl, The Jackson Laboratory ([[Media:A_Diehl_Cell_Ontology_Workshop_Introduction.ppt|slides]]) | |
| − | 10:20 - 10:40 Presentation of additional introductory material, Dr. Richard Scheuermann, UT Southwestern Medical Center | + | 9:20 - 10:10 Ontologies and the OBO foundry vision of interrelated ontologies, Dr. Chris Mungall, Berkeley Bioinformatics and Ontologies Project ([[Media:Cell-NIAID-OBO-Mungall.ppt|slides]]) |
| + | |||
| + | 10:10 - 10:20 Presentation of Meeting Goals, Dr. Alexander Diehl ([[Media:A_Diehl_Meeting_Goals.ppt|slides]]) | ||
| + | |||
| + | 10:20 - 10:40 Presentation of additional introductory material, Dr. Richard Scheuermann, UT Southwestern Medical Center ([[Media:R_Scheuermann_Cell_Ontology_Intro.ppt|slides]]) | ||
10:40 - 11:00 BREAK | 10:40 - 11:00 BREAK | ||
| − | 11:00 | + | 11:00 - 11:10 T cell representation in CL, Dr. Alexander Diehl ([[Media:A_Diehl_T_cell_Introduction.ppt|slides]], [http://www.bioontology.org/wiki/images/f/f7/T_cells.jpg graphical view]) |
| − | 11:10 | + | 11:10 - 11:30 T cell ontology extension, Dr. Penny Morel, University of Pittsburgh ([[Media:P_Morel_Tcellworkshop.ppt|slides]]) |
| − | 11:30 | + | 11:30 - 12:30 Discussion/Consensus on T cell representation |
| − | 12:30- 1:45 – LUNCH | + | 12:30 - 1:45 – LUNCH |
| − | 1:45 | + | 1:45 - 1:55 B cell representation in CL, Dr. Alexander Diehl ([[Media:B_Cell_introduction_A_Diehl.ppt|slides]], [http://www.bioontology.org/wiki/images/9/97/B_cells.jpg graphical view]) |
| − | 1:55 | + | 1:55 - 2:30 B cell ontology extension, Dr. Martin Zand, University of Rochester Medical Center |
2:30 - 3:20 Discussion/Consensus on B cell representation | 2:30 - 3:20 Discussion/Consensus on B cell representation | ||
| − | 3:20 | + | 3:20 - 3:40 BREAK |
| − | 3:40 | + | 3:40 - 4:15 Discussion/Consensus on B cell representation |
4:15 pm ADJOURN | 4:15 pm ADJOURN | ||
| − | '''''May 14: Innate Immune Cell Representation | + | '''''May 14: Innate Immune Cell Representation''''' |
| − | 8:00 | + | 8:00 - 8:45 am Registration/Coffee |
8:45 - 9:15 Discussion of proposed T cell changes illustrated in OBO-Edit based on previous day's discussion, led by Dr. Alexander Diehl | 8:45 - 9:15 Discussion of proposed T cell changes illustrated in OBO-Edit based on previous day's discussion, led by Dr. Alexander Diehl | ||
| − | 9:15 | + | 9:15 - 9:25 Dendritic cell representation in CL, Dr. Alexander Diehl ([http://www.bioontology.org/wiki/images/3/3b/DendriticCells.jpg graphical view]) |
| − | 9:25 | + | 9:25 - 10:00 Improvements in dendritic cell representation in CL, Dr. Lindsay G. Cowell, Duke University |
| − | 10:00 | + | 10:00 - 10:55 Discussion/Consensus on dendritic cell representation |
| − | 10:55 | + | 10:55 - 11:15 BREAK |
| − | 11:15-12:15 Discussion/Consensus on dendritic cell representation | + | 11:15 - 12:15 Discussion/Consensus on dendritic cell representation |
| − | 12:15- 1:30 – LUNCH | + | 12:15 - 1:30 – LUNCH |
| − | 1:30 - 2:10 Discussion about | + | 1:30 - 2:10 Discussion about relationship types need for CL 2.0, led by Dr. Chris Mungall |
| − | 2:10 | + | 2:10 - 2:20 Macrophage representation in CL, Dr. Alexander Diehl ([http://www.bioontology.org/wiki/images/c/ce/Macrophages-osteoclasts.jpg graphical view]) |
2:20 - 3:15 Discussion/Consensus on macrophage representation | 2:20 - 3:15 Discussion/Consensus on macrophage representation | ||
| − | 3:15 | + | 3:15 - 3:25 BREAK |
| − | 3:25 | + | 3:25 - 4:00 Meeting wrap up and setting of Action Items |
4:00pm ADJOURN | 4:00pm ADJOURN | ||
Latest revision as of 16:38, 22 May 2008
NIAID-sponsored Workshop: Immune Cell Representation in the Cell Ontology
May 13 -14, 2008
Bethesda North Marriott Hotel & Conference Center, Salon H
5701 Marinelli Road
Bethesda, Maryland 20852 USA
Note that the Agenda below reflects the timeline of the meeting as it actually occured ; the original Agenda is here.
Agenda
May 13: Adaptive Immune Cell Representation
8:00 - 9:00am Registration/Coffee
9:00 - 9:10 Welcome, NIAID staff
9:10 - 9:20 Brief introduction to the CL and its development, Dr. Alexander Diehl, The Jackson Laboratory (slides)
9:20 - 10:10 Ontologies and the OBO foundry vision of interrelated ontologies, Dr. Chris Mungall, Berkeley Bioinformatics and Ontologies Project (slides)
10:10 - 10:20 Presentation of Meeting Goals, Dr. Alexander Diehl (slides)
10:20 - 10:40 Presentation of additional introductory material, Dr. Richard Scheuermann, UT Southwestern Medical Center (slides)
10:40 - 11:00 BREAK
11:00 - 11:10 T cell representation in CL, Dr. Alexander Diehl (slides, graphical view)
11:10 - 11:30 T cell ontology extension, Dr. Penny Morel, University of Pittsburgh (slides)
11:30 - 12:30 Discussion/Consensus on T cell representation
12:30 - 1:45 – LUNCH
1:45 - 1:55 B cell representation in CL, Dr. Alexander Diehl (slides, graphical view)
1:55 - 2:30 B cell ontology extension, Dr. Martin Zand, University of Rochester Medical Center
2:30 - 3:20 Discussion/Consensus on B cell representation
3:20 - 3:40 BREAK
3:40 - 4:15 Discussion/Consensus on B cell representation
4:15 pm ADJOURN
May 14: Innate Immune Cell Representation
8:00 - 8:45 am Registration/Coffee
8:45 - 9:15 Discussion of proposed T cell changes illustrated in OBO-Edit based on previous day's discussion, led by Dr. Alexander Diehl
9:15 - 9:25 Dendritic cell representation in CL, Dr. Alexander Diehl (graphical view)
9:25 - 10:00 Improvements in dendritic cell representation in CL, Dr. Lindsay G. Cowell, Duke University
10:00 - 10:55 Discussion/Consensus on dendritic cell representation
10:55 - 11:15 BREAK
11:15 - 12:15 Discussion/Consensus on dendritic cell representation
12:15 - 1:30 – LUNCH
1:30 - 2:10 Discussion about relationship types need for CL 2.0, led by Dr. Chris Mungall
2:10 - 2:20 Macrophage representation in CL, Dr. Alexander Diehl (graphical view)
2:20 - 3:15 Discussion/Consensus on macrophage representation
3:15 - 3:25 BREAK
3:25 - 4:00 Meeting wrap up and setting of Action Items
4:00pm ADJOURN