PATO Meeting
General Information and Registration
The National Center for Biomedical Ontology will host a two-day meeting focused on the Phenotype and Trait Ontology (PATO) December 1-2, 2006 at Stanford University in Palo Alto, CA.
Agenda
Media:Pheno_workshop_Dec2006.pdf
Minutes
Media: Updated Meeting Minutes
Presentations
Day 1 presentations
Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature Media:GullyBurns.ppt
Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt Media:AlexanderGarcia.ppt
Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing Media:Adrien Coulet.pdf
Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics Media:TinaHernandez.ppt
James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals Media:JamesReecy.ppt
Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research Media:VictoriaPetri.ppt
Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration Media:CarolBastiani.ppt
Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease Media:JananEppig.ppt
Rex Chisholm: Phenotype curation tool and ontologies at dictyBase Media:RexChisholm.ppt
Minna Lehvaslaiho: HIV Media:MinnaLehvaslaiho.ppt
Eurie Hong: Yeast Media:EurieHong.ppt
Tanya Berardini: Arabidopsis Media:TanyaBerardini.ppt
Christopher Smith: Insect behavior Media:ChristopherSmith.ppt
Michael Ashburner: Drosophila (live demo, no slides)
Maryann Martone: BIRN
Jim Balhoff: NESCENT Media:JimBalhoff.pdf
Day 2 presentations
Chris Mungall Media:ChrisMungall.ppt
Monte Westerfield Media:MonteWesterfield.ppt
Venue
Stanford University Clark Center, room S360
Directions to Stanford Medical Center
Map of Stanford Medical Center--see "C", Clark Center
Directions on taking Free Marguerite Shuttle Bus--take Line A to Medical Center
Accommodations
We aren't reserving a block of rooms anywhere, but these local hotels are close by and have Stanford shuttle service.