Difference between revisions of "SWAT4LS Tutorial"
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| + | == Web Services and Development of Semantic Applications == | ||
| + | * Presented by '''[http://bmir.stanford.edu/people/view.php/trish_whetzel Trish Whetzel]''' (whetzel _at_ stanford.edu) at the [http://www.swat4ls.org SWAT4LS 2011 Conference] | ||
| + | |||
== What You Need to Participate == | == What You Need to Participate == | ||
* BioPortal API Key - get your API Key by registering for an account on [http://bioportal.bioontology.org/accounts/new BioPortal] | * BioPortal API Key - get your API Key by registering for an account on [http://bioportal.bioontology.org/accounts/new BioPortal] | ||
* Computer with Internet connection | * Computer with Internet connection | ||
* Software editor of your choice | * Software editor of your choice | ||
| − | * Sample code will be demonstrated in both Java and Perl | + | * Sample code will be demonstrated in both Java and Perl https://bmir-gforge.stanford.edu/gf/project/client_examples/scmsvn/?action=browse&path=%2Ftrunk%2F |
| + | * Nice to Have | ||
| + | ** [https://addons.mozilla.org/en-US/firefox/addon/http-resource-test/ Firefox HTTP Resource Test Plugin] | ||
| + | ** [https://addons.mozilla.org/en-US/firefox/addon/ncbo-api-key/ Firefox API Key Add-on] | ||
| + | ** Some experience with parsing XML | ||
| + | *** Java - Sax/DOM | ||
| + | *** Perl - LibXML | ||
== Content == | == Content == | ||
* Introduction to REST Web services | * Introduction to REST Web services | ||
* [http://bioportal.bioontology.org NCBO BioPortal] | * [http://bioportal.bioontology.org NCBO BioPortal] | ||
| − | * [http://www.bioontology.org/wiki/index.php/NCBO_REST_services | + | * NCBO REST Web services |
| − | + | ** [http://www.bioontology.org/wiki/index.php/NCBO_REST_services Ontology Web services] - Search, Traverse, Download | |
| − | ** Notes Web service - Propose Terms, Comment | + | ** [http://www.bioontology.org/wiki/index.php/View_Extraction View Extraction Web service] - Subset |
| − | ** Mapping Web services - Create, Upload, Download | + | ** [http://www.bioontology.org/wiki/index.php/Ontology_Notes Notes Web service] - Propose Terms, Comment |
| − | ** Widgets - Tree view, Auto-complete, Graph view | + | ** [http://www.bioontology.org/wiki/index.php/BioPortal_Mappings_Service Mapping Web services] - Create, Upload, Download |
| − | ** Annotation - Ontology Term recognition | + | ** [http://www.bioontology.org/wiki/index.php/NCBO_Widgets Widgets] - Tree view, Auto-complete, Graph view |
| − | ** Data Access - Fetch ontology-indexed data | + | ** [http://www.bioontology.org/wiki/index.php/Annotator_Web_service Annotation] - Ontology Term recognition |
| − | * BioPortal SPARQL Endpoint - Access Ontologies via SPARQL | + | ** [http://www.bioontology.org/wiki/index.php/Resource_Index Data Access] - Fetch ontology-indexed data |
| + | * [http://www.bioontology.org/wiki/index.php/SPARQL_BioPortal BioPortal SPARQL Endpoint] - Access Ontologies via SPARQL | ||
| + | |||
| + | == Slides == | ||
| + | * Download slides [http://stanford.edu/~whetzel/downloads/Whetzel_SWAT4LS-2011_Tutorial.pdf.zip here] | ||
| + | |||
| + | == NCBO Sample Code Cookbook == | ||
| + | * Visit the [http://www.bioontology.org/wiki/index.php/Sample_Code_Cookbook Sample Code Cookbook] to see ontology-based uses cases and solutions using the NCBO Web services | ||
| + | * Add you own use case and solution!!! | ||
| + | |||
| + | == NCBO Users == | ||
| + | * Email [mailto:support@bioontology.org NCBO Users] to contact other users and our NCBO support staff with your questions | ||
| + | |||
| + | == Keep in Touch == | ||
| + | * NCBO Announce mailing list: https://mailman.stanford.edu/mailman/listinfo/bioportal-announce | ||
| + | * Software support: support@bioontology | ||
| + | * Twitter: @bioontology | ||
| + | * Facebook and LinkedIn | ||
| + | |||
| + | == Back to Dissemination/Outreach Main Wiki page == | ||
| + | http://www.bioontology.org/wiki/index.php/Dissemination_Wiki | ||
Latest revision as of 11:57, 8 December 2011
Web Services and Development of Semantic Applications
- Presented by Trish Whetzel (whetzel _at_ stanford.edu) at the SWAT4LS 2011 Conference
What You Need to Participate
- BioPortal API Key - get your API Key by registering for an account on BioPortal
- Computer with Internet connection
- Software editor of your choice
- Sample code will be demonstrated in both Java and Perl https://bmir-gforge.stanford.edu/gf/project/client_examples/scmsvn/?action=browse&path=%2Ftrunk%2F
- Nice to Have
- Firefox HTTP Resource Test Plugin
- Firefox API Key Add-on
- Some experience with parsing XML
- Java - Sax/DOM
- Perl - LibXML
Content
- Introduction to REST Web services
- NCBO BioPortal
- NCBO REST Web services
- Ontology Web services - Search, Traverse, Download
- View Extraction Web service - Subset
- Notes Web service - Propose Terms, Comment
- Mapping Web services - Create, Upload, Download
- Widgets - Tree view, Auto-complete, Graph view
- Annotation - Ontology Term recognition
- Data Access - Fetch ontology-indexed data
- BioPortal SPARQL Endpoint - Access Ontologies via SPARQL
Slides
- Download slides here
NCBO Sample Code Cookbook
- Visit the Sample Code Cookbook to see ontology-based uses cases and solutions using the NCBO Web services
- Add you own use case and solution!!!
NCBO Users
- Email NCBO Users to contact other users and our NCBO support staff with your questions
Keep in Touch
- NCBO Announce mailing list: https://mailman.stanford.edu/mailman/listinfo/bioportal-announce
- Software support: support@bioontology
- Twitter: @bioontology
- Facebook and LinkedIn
Back to Dissemination/Outreach Main Wiki page
http://www.bioontology.org/wiki/index.php/Dissemination_Wiki