Difference between revisions of "Tutorials and Classes"

From NCBO Wiki
Jump to navigation Jump to search
m
 
(102 intermediate revisions by 2 users not shown)
Line 1: Line 1:
−
This is a draft schedule of tutorials and classes to be co-located with the [http://icbo.buffalo.edu International Conference on Biomedical Ontology], July 24-26, 2009
+
__TOC__
 +
 
 +
 
 +
==Logistics and Registration ==
 +
 
 +
'''Logistics''' details, including room locations, are available [[Logistics: Tutorials and Classes | here]].
 +
 
 +
A '''registration form''' is available [http://icbo.buffalo.edu/Tutorials_and_Classes.pdf here]. Please note that pre-registration for tutorials and classes is compulsory.
 +
 
 +
Tutorials and classes are co-located with the [http://icbo.buffalo.edu International Conference on Biomedical Ontology].
  
 
----
 
----
  
−
'''Half-Day Tutorials '''  
+
==Half-Day Tutorials==
 +
 +
Morning sessions are from 9am to 12.30pm. Afternoon sessions are from 1.30pm to 5pm.
 +
 
 +
'''July 20: Morning'''
 +
 
 +
Fabian Neuhaus (NIST): [http://www.bioontology.org/wiki/index.php/Neuhaus Formal Methods for Biologists]; also offered as part of 2-day class on [http://www.bioontology.org/wiki/index.php/Bittner_and_Donnelly Spatial Ontology and Qualitative Reasoning]
 +
*Slides: [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus]
  
−
'''July 20'''
+
'''July 20: Afternoon'''
  
−
*Fabian Neuhaus (NIST): Reasoning with First Order Logic; also offered as part of 2-day course on [[Spatial Ontology and Qualitative Reasoning]] (Morning)
+
Mathias Brochhausen (IFOMIS): [[The Ontology of Paleobiology]]  
 +
*Slides: [http://icbo.buffalo.edu/presentations/Brochhausen.ppt Brochhausen]
  
−
*Mathias Brochhausen (IFOMIS): [[The Ontology of Paleobiology]] (Afternoon)
+
'''July 21: Morning'''
  
−
'''July 21'''
+
Colin Batchelor (Royal Society of Chemistry): [[An Introduction to Chemistry Ontology]]
 +
*Slides: [http://icbo.buffalo.edu/presentations/Batchelor.ppt Batchelor]
  
−
* Colin Batchelor (Royal Society of Chemistry): [[An Introduction to Chemistry Ontology]] (Morning)
+
'''July 22: Morning'''
 +
Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]  
 +
*[http://icbo.buffalo.edu/presentations/Smith.ppt Slides: Smith]; [http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video]
  
−
'''July 22'''
+
'''July 22: Afternoon'''
−
*Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day course [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]](Morning)
+
 
−
*Olivier Bodenreider (National Library of Medicine): An Introduction to Biomedical Ontology (Afternoon)
+
Olivier Bodenreider (National Library of Medicine): [[An Introduction to Biomedical Ontology]]
 +
*Slides: [http://mor.nlm.nih.gov/pubs/pres/090722-ICBO-tutorial.pdf Bodenreider]
 +
Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]  
 +
*[http://icbo.buffalo.edu/presentations//Ceusters.ppt Slides: Ceusters]; [http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video]
 +
 
 +
'''July 23: Morning'''
 +
 
 +
Natasha Noy (Stanford University) [[Using_WebProtege_and_NCBO_BioPortal | Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies]]
 +
*Slides: [http://icbo.buffalo.edu/presentations/Noy.pdf Noy]
 +
 
 +
'''July 23: Afternoon'''
 +
 
 +
David Osumi-Sutherland (Flybase / Gene Ontology Consortium): [[OBO-Edit | The OBO-Edit Ontology Developer's Environment: A Practical Introduction]]
 +
*Slides: [http://www.bioontology.org/wiki/index.php/OBO-Edit Osumi-Sutherland]
  
−
'''July 23'''
 
−
* Ontology development tools
 
−
** The Protégé Ontology Editor and Knowledge Acquisition System (Morning)
 
−
** The OBO-Edit Ontology Developer's Environment (Afternoon)
 
 
----
 
----
  
−
'''Two-Day Classes'''
+
==Two-Day Classes==
 +
 
 +
Classes meet from 9am to 5pm, with lunch from 12.30 to 1.30pm.
  
 
'''July 20-21'''  
 
'''July 20-21'''  
  
−
Randall Dipert and Neil Williams (Buffalo): [[The Ontology of Events, Powers and Dispositions]]
+
Randall Dipert and Neil Williams (Buffalo): [[The Ontology of Events, Powers and Dispositions]]
 +
*Slides:  [http://icbo.buffalo.edu/presentations/Dipert.pdf Dipert]
  
−
Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): [[Bittner and Donnelly | Spatial Ontology and Qualitative Reasoning]]
+
Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): [[Bittner_Donnelly_and_Neuhaus | Spatial Ontology and Qualitative Reasoning]]
 +
*Slides:  [http://icbo.buffalo.edu/presentations/Neuhaus.pdf Neuhaus] [http://icbo.buffalo.edu/presentations/Donnelly.pdf Donnelly]
  
 
'''July 22-23'''
 
'''July 22-23'''
  
−
Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]
+
Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): [[From BFO to IAO | From Basic Formal Ontology to the Information Artifact Ontology]]
 +
*[http://icbo.buffalo.edu/presentations/Smith.ppt Slides: Smith] [http://icbo.buffalo.edu/presentations/Ceusters.ppt Ceusters] [http://icbo.buffalo.edu/presentations/Ruttenberg.pdf Ruttenberg]
 +
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Streaming video]
  
 
David Hershenov (Buffalo): [[Metaphysical Foundations of Biomedical Ethics]]
 
David Hershenov (Buffalo): [[Metaphysical Foundations of Biomedical Ethics]]
 +
 +
----

Latest revision as of 08:44, 27 December 2009


Logistics and Registration

Logistics details, including room locations, are available here.

A registration form is available here. Please note that pre-registration for tutorials and classes is compulsory.

Tutorials and classes are co-located with the International Conference on Biomedical Ontology.

Half-Day Tutorials

Morning sessions are from 9am to 12.30pm. Afternoon sessions are from 1.30pm to 5pm.

July 20: Morning

Fabian Neuhaus (NIST): Formal Methods for Biologists; also offered as part of 2-day class on Spatial Ontology and Qualitative Reasoning

July 20: Afternoon

Mathias Brochhausen (IFOMIS): The Ontology of Paleobiology

July 21: Morning

Colin Batchelor (Royal Society of Chemistry): An Introduction to Chemistry Ontology

July 22: Morning Barry Smith (Buffalo): Introduction to Basic Formal Ontology; also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology

July 22: Afternoon

Olivier Bodenreider (National Library of Medicine): An Introduction to Biomedical Ontology

Werner Ceusters (Buffalo): Introduction to Referent Tracking: also offered as part of 2-day class From Basic Formal Ontology to the Information Artifact Ontology

July 23: Morning

Natasha Noy (Stanford University) Using WebProtégé and NCBO BioPortal to develop and maintain biomedical ontologies

July 23: Afternoon

David Osumi-Sutherland (Flybase / Gene Ontology Consortium): The OBO-Edit Ontology Developer's Environment: A Practical Introduction

Two-Day Classes

Classes meet from 9am to 5pm, with lunch from 12.30 to 1.30pm.

July 20-21

Randall Dipert and Neil Williams (Buffalo): The Ontology of Events, Powers and Dispositions

Thomas Bittner, Maureen Donnelly and Fabian Neuhaus (Buffalo): Spatial Ontology and Qualitative Reasoning

July 22-23

Werner Ceusters (Buffalo), Alan Ruttenberg (Science Commons) and Barry Smith (Buffalo): From Basic Formal Ontology to the Information Artifact Ontology

David Hershenov (Buffalo): Metaphysical Foundations of Biomedical Ethics

Retrieved from "https://www.bioontology.org//mediawiki/index.php?title=Tutorials_and_Classes&oldid=9618"