Difference between revisions of "Workshop Agenda"
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| − | #Background and motivation | + | '''BIRN Ontology Workshop 2006''' |
| − | #* Brief overview of major biological problems BIRN seeks to address | + | |
| − | #* | + | ===Feb 28=== |
| − | #Tools | + | #<b>Background and motivation (9AM-10AM)</b> |
| − | #* Tutorial on Protégé and | + | #* Brief overview of major biological problems BIRN seeks to address <b>[BIRN]</b> |
| − | #* | + | #*<b>10-10:15am</b>Break |
| − | #* | + | #<b>Tools (10:15AM-Noon)</b> |
| − | #** | + | #* Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) <b>[BIRN]</b> |
| − | #** | + | #* Tutorial on Protégé and plugins (examples from other ontology projects) <b>[Stanford]</b> |
| − | #Content | + | #* Discussion |
| − | #* Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance) | + | #<b>Ontology Usage (1PM-5PM)</b> |
| − | #* | + | #*<b>1-2:30pm</b> Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO, epressing biological concepts in terms of an ontology; annotation tools) <b>[Stanford]</b> |
| − | #Potential Applications: what do we need to get there from here? | + | #*<b>2:30-3pm</b> Break |
| + | #*<b>3-4pm</b> Possible future directions (formal relation ontologies, composed annotations, image annotation with ontologies) <b>[Stanford]</b> | ||
| + | #*<b>4-5pm</b> Discussion | ||
| + | |||
| + | ===Mar 1=== | ||
| + | #<b>Basics of Ontologies (9AM-Noon)</b> | ||
| + | #*<b>9-10am</b> Discuss current capabilities and challenges related to ontologies in BIRN <b>[BIRN]</b> | ||
| + | #*<b>10-10:30</b>Break | ||
| + | #*<b>10:30-11:30</b> How to Build an Ontology <b>[Barry]</b> | ||
| + | #*<b>11:30-noon</b> The Ontology of Relations <b>[Barry]</b> | ||
| + | #<b>Content (1PM-3PM)</b> | ||
| + | #*<b>1-2pm</b> Best practices; lessons learned from other ontology development projects <b>[Barry]</b> | ||
| + | #*<b>2-3pm</b> Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance) | ||
| + | #** BIRN Ontologies: An Overview <b>[Barry]</b> | ||
| + | #*<b>3-3:30pm</b>Break | ||
| + | #<b>Potential Applications: what do we need to get there from here? (3:30PM-5PM) [Barry and Nigam]</b> | ||
| + | #* What tools to be developed, what content should be put into OWL, what tools cBiO is developing | ||
#* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | #* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | ||
#* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | #* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | ||
Latest revision as of 15:04, 1 December 2014
BIRN Ontology Workshop 2006
Feb 28
- Background and motivation (9AM-10AM)
- Brief overview of major biological problems BIRN seeks to address [BIRN]
- 10-10:15amBreak
- Tools (10:15AM-Noon)
- Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) [BIRN]
- Tutorial on Protégé and plugins (examples from other ontology projects) [Stanford]
- Discussion
- Ontology Usage (1PM-5PM)
- 1-2:30pm Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO, epressing biological concepts in terms of an ontology; annotation tools) [Stanford]
- 2:30-3pm Break
- 3-4pm Possible future directions (formal relation ontologies, composed annotations, image annotation with ontologies) [Stanford]
- 4-5pm Discussion
Mar 1
- Basics of Ontologies (9AM-Noon)
- 9-10am Discuss current capabilities and challenges related to ontologies in BIRN [BIRN]
- 10-10:30Break
- 10:30-11:30 How to Build an Ontology [Barry]
- 11:30-noon The Ontology of Relations [Barry]
- Content (1PM-3PM)
- 1-2pm Best practices; lessons learned from other ontology development projects [Barry]
- 2-3pm Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- BIRN Ontologies: An Overview [Barry]
- 3-3:30pmBreak
- Potential Applications: what do we need to get there from here? (3:30PM-5PM) [Barry and Nigam]
- What tools to be developed, what content should be put into OWL, what tools cBiO is developing
- Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
- Computer reasoning with neuroanatomical/spatial component of Neuroscience data