Difference between revisions of "Workshop Agenda"
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| − | #Background and motivation | + | #<b>Background and motivation</b> |
#* Brief overview of major biological problems BIRN seeks to address <b>[BIRN]</b> | #* Brief overview of major biological problems BIRN seeks to address <b>[BIRN]</b> | ||
#* Discuss current capabilities and challenges related to ontologies in BIRN <b>[BIRN]</b> | #* Discuss current capabilities and challenges related to ontologies in BIRN <b>[BIRN]</b> | ||
#* How to Build an Ontology <b>[Barry]</b> | #* How to Build an Ontology <b>[Barry]</b> | ||
| − | #Tools | + | #<b>Tools</b> |
#* Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) <b>[BIRN]</b> | #* Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) <b>[BIRN]</b> | ||
#* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) <b>[Stanford]</b> | #* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) <b>[Stanford]</b> | ||
| Line 10: | Line 10: | ||
#** Possible future directions (formal relation ontologies and composed annotations) <b>[Stanford]</b> | #** Possible future directions (formal relation ontologies and composed annotations) <b>[Stanford]</b> | ||
#** Image annotation with ontologies <b>[Stanford]</b> | #** Image annotation with ontologies <b>[Stanford]</b> | ||
| − | #Content | + | #<b>Content</b> |
#* Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance) | #* Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance) | ||
#** BIRN Ontologies: An Overview <b>[Barry]</b> | #** BIRN Ontologies: An Overview <b>[Barry]</b> | ||
#** The Ontology of Spatial Relations <b>[Barry]</b> | #** The Ontology of Spatial Relations <b>[Barry]</b> | ||
#* Best practices; lessons learned from other ontology development projects <b>[Barry]</b> | #* Best practices; lessons learned from other ontology development projects <b>[Barry]</b> | ||
| − | #Potential Applications: what do we need to get there from here? | + | #<b>Potential Applications: what do we need to get there from here?</b> |
#* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | #* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | ||
#* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | #* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | ||
Revision as of 21:51, 27 January 2006
- Background and motivation
- Brief overview of major biological problems BIRN seeks to address [BIRN]
- Discuss current capabilities and challenges related to ontologies in BIRN [BIRN]
- How to Build an Ontology [Barry]
- Tools
- Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) [BIRN]
- Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) [Stanford]
- Expressing biological concepts in terms of an ontology [Stanford]
- Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO) [Stanford]
- Possible future directions (formal relation ontologies and composed annotations) [Stanford]
- Image annotation with ontologies [Stanford]
- Content
- Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- BIRN Ontologies: An Overview [Barry]
- The Ontology of Spatial Relations [Barry]
- Best practices; lessons learned from other ontology development projects [Barry]
- Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- Potential Applications: what do we need to get there from here?
- Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
- Computer reasoning with neuroanatomical/spatial component of Neuroscience data