Difference between revisions of "Workshop Agenda"
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#* Brief overview of major biological problems BIRN seeks to address | #* Brief overview of major biological problems BIRN seeks to address | ||
#* Discuss current capabilities and challenges related to ontologies in BIRN | #* Discuss current capabilities and challenges related to ontologies in BIRN | ||
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#Tools | #Tools | ||
#* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) | #* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) | ||
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#** --Possible future directions (formal relation ontologies and composed annotations) | #** --Possible future directions (formal relation ontologies and composed annotations) | ||
#** --Image annotation with ontologies | #** --Image annotation with ontologies | ||
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#Content | #Content | ||
#* Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance) | #* Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance) | ||
#* Best practices; lessons learned from other ontology development projects (Barry Smith) | #* Best practices; lessons learned from other ontology development projects (Barry Smith) | ||
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#Potential Applications: what do we need to get there from here? | #Potential Applications: what do we need to get there from here? | ||
#* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | #* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | ||
#* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | #* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | ||
Revision as of 21:39, 27 January 2006
- Background and motivation
- Brief overview of major biological problems BIRN seeks to address
- Discuss current capabilities and challenges related to ontologies in BIRN
- Tools
- Tutorial on Protégé and some of its more advanced features (examples from other ontology projects)
- Expressing biological concepts in terms of an ontology
- --Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO)
- --Possible future directions (formal relation ontologies and composed annotations)
- --Image annotation with ontologies
- Content
- Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- Best practices; lessons learned from other ontology development projects (Barry Smith)
- Potential Applications: what do we need to get there from here?
- Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
- Computer reasoning with neuroanatomical/spatial component of Neuroscience data