Workshop Agenda
Jump to navigation
Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
BIRN Ontology Workshop 2006
Feb 28
- Background and motivation (9AM-10AM)
- Brief overview of major biological problems BIRN seeks to address [BIRN]
- 10-10:15amBreak
- Tools (10:15AM-Noon)
- Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) [BIRN]
- Tutorial on Protégé and plugins (examples from other ontology projects) [Stanford]
- Discussion
- Ontology Usage (1PM-5PM)
- 1-2:30pm Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO, epressing biological concepts in terms of an ontology; annotation tools) [Stanford]
- 2:30-3pm Break
- 3-4pm Possible future directions (formal relation ontologies, composed annotations, image annotation with ontologies) [Stanford]
- 4-5pm Discussion
Mar 1
- Basics of Ontologies (9AM-Noon)
- 9-10am Discuss current capabilities and challenges related to ontologies in BIRN [BIRN]
- 10-10:30Break
- 10:30-11:30 How to Build an Ontology [Barry]
- 11:30-noon The Ontology of Relations [Barry]
- Content (1PM-3PM)
- 1-2pm Best practices; lessons learned from other ontology development projects [Barry]
- 2-3pm Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- BIRN Ontologies: An Overview [Barry]
- 3-3:30pmBreak
- Potential Applications: what do we need to get there from here? (3:30PM-5PM) [Barry and Nigam]
- What tools to be developed, what content should be put into OWL, what tools cBiO is developing
- Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
- Computer reasoning with neuroanatomical/spatial component of Neuroscience data