Difference between revisions of "Workshop on Ontology of Diseases"
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Olivier Bodenreider -– National Library of Medicine, U.S.A | Olivier Bodenreider -– National Library of Medicine, U.S.A | ||
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Werner Ceusters -– ECOR, Saarland University, Germany | Werner Ceusters -– ECOR, Saarland University, Germany | ||
| − | Rex Chisholm -– Center for Genetic Medicine, Northwestern University, U.S.A | + | Rex L. Chisholm -– Center for Genetic Medicine, Northwestern University, U.S.A |
| − | Christopher Chute -– NCBO, Mayo Clinic College of Medicine, U.S.A | + | Christopher G. Chute -– NCBO, Mayo Clinic College of Medicine, U.S.A |
Elaine Collier -– National Center for Research Resources, National Institutes of Health, U.S.A | Elaine Collier -– National Center for Research Resources, National Institutes of Health, U.S.A | ||
| − | Lindsay Cowell -– Immunology, Duke University, U.S.A | + | Lindsay G. Cowell -– Center for Computational Immunology, Duke University, U.S.A |
| − | + | Jana T. Eppig -– The Jackson Laboratory, U.S.A | |
Yong Gao -– Massachusetts General Hospital, Harvard Medical School, U.S.A | Yong Gao -– Massachusetts General Hospital, Harvard Medical School, U.S.A | ||
| − | Louis Goldberg -– Oral Biology, University at Buffalo, U.S.A | + | Louis J. Goldberg -– Oral Biology, University at Buffalo, U.S.A |
Peter Good -– National Human Genome Research Institute, U.S.A | Peter Good -– National Human Genome Research Institute, U.S.A | ||
| − | + | Jeffrey S/ Grethe -- University of San Diego | |
Kristel Hackett -– MGH Laboratory of Computer Science, U.S.A | Kristel Hackett -– MGH Laboratory of Computer Science, U.S.A | ||
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Frank Hartel -– National Cancer Institute, National Institutes of Health, U.S.A | Frank Hartel -– National Cancer Institute, National Institutes of Health, U.S.A | ||
| − | Winston Hide -– SANBI, University of | + | Winston Hide -– SANBI, University of the Western Cape, South Africa |
| − | the Western Cape, South Africa | ||
| − | Oliver Hofmann -– SANBI, University of | + | Oliver Hofmann -– SANBI, University of the Western Cape, South Africa |
| − | the Western Cape, South Africa | ||
Ingvar Johansson -– IFOMIS, Saarland University, Germany | Ingvar Johansson -– IFOMIS, Saarland University, Germany | ||
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Waclaw Kusnierczyk -- Norwegian University of Science and Technology, Trondheim | Waclaw Kusnierczyk -- Norwegian University of Science and Technology, Trondheim | ||
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Suzanna Lewis -– NCBO, Lawrence Berkeley National Laboratory, U.S.A | Suzanna Lewis -– NCBO, Lawrence Berkeley National Laboratory, U.S.A | ||
| − | Onard Mejino -– Structural Informatics Group, University of Washington, U.S.A | + | Jose (Onard) Mejino -– Structural Informatics Group, University of Washington, U.S.A |
Chris Mungall -– NCBO, Lawrence Berkeley National Laboratory, U.S.A | Chris Mungall -– NCBO, Lawrence Berkeley National Laboratory, U.S.A | ||
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Fabian Neuhaus -– NCBO, University at Buffalo, U.S.A | Fabian Neuhaus -– NCBO, University at Buffalo, U.S.A | ||
| − | Alan Rector -- Computer Science, University of Manchester, U.K. | + | Alan L. Rector -- Computer Science, University of Manchester, U.K. |
| + | |||
| + | Richard H. Scheuermann -– Pathology, U.T. Southwestern Medical Center, U.S.A | ||
| − | + | Lynn Schriml -- The Institute for Genomic Research, Rockville MD, U.S.A. | |
Stefan Schulz -– Medical Informatics, Freiburg University Hospital, Germany | Stefan Schulz -– Medical Informatics, Freiburg University Hospital, Germany | ||
| − | Kent Spackman -– Medical Informatics, Oregon Health & Science University, U.S.A | + | Kent A. Spackman -– Medical Informatics, Oregon Health & Science University, U.S.A |
Barry Smith -– NCBO, University at Buffalo, U.S.A | Barry Smith -– NCBO, University at Buffalo, U.S.A | ||
| − | + | Nicole Washington -- NCBO, Lawrence Berkeley National Labs., Berkeley CA, U.S.A. | |
Monte Westerfield -– Institute of Neuroscience, University of Oregon, U.S.A | Monte Westerfield -– Institute of Neuroscience, University of Oregon, U.S.A | ||
| − | Owen White -– The Institute for Genomic Research, U.S.A | + | Owen White -– The Institute for Genomic Research, Rockville MD, U.S.A |
Neil Williams -– Philosophy, University at Buffalo, U.S.A | Neil Williams -– Philosophy, University at Buffalo, U.S.A | ||
Revision as of 08:02, 12 October 2006
General Information
The National Center for Biomedical Ontology will host a two-day workshop focused on the ontology of diseases on November 6-7, 2006 in Baltimore, MD.
The goals of the workshop are to promote sound, principles-based ontology construction and to raise the level of cooperation between people who work in this and related fields.
Participation
PLEASE NOTE THAT REGISTRATION IS CLOSED.
If you have any suggestions or questions about the workshop, please don't hesitate to contact Fabian Neuhaus.
Preliminary Agenda
Monday November 6
Morning
- 8.30am Registration and Continental Breakfast
- 9am Participant Introductions
Session I: Disease Ontologies - Where We Are (Moderator: Rex Chisholm)
- 9.15am Rex Chisholm: OBO Disease Ontology
- 10.15am Coffee
- 10.30am Winston Hide or Oliver Hofmann: eVOC Ontologies
- 11.30am Coffee
- 11.45am Kent Spackman: SNOMED CT
Afternoon
- 1.00pm Lunch
Session II: What is a Disease? (Moderator: Barry Smith)
- 2.00pm What a Disease Ontology is For
- 3.30pm Coffee
- 4.00pm How to Build a Disease Ontology
Tuesday November 7
Morning
- 8.30am Continental Breakfast
Session III: Problems of Disease Ontologies (Moderator: Werner Ceusters)
- 9am TBA
- 10.30am Coffee
- 11am TBA
Afternoon
- 1pm Lunch
Session IV: The Next Steps: Moderated Discussion (Moderatrix: Suzanna Lewis)
- 2.00pm The Next Steps
- 3.30pm
- 4.00pm Strategy Session
Participants
Carol Bean -– National Center for Research Resources, National Institutes of Health, U.S.A
Olivier Bodenreider -– National Library of Medicine, U.S.A
Werner Ceusters -– ECOR, Saarland University, Germany
Rex L. Chisholm -– Center for Genetic Medicine, Northwestern University, U.S.A
Christopher G. Chute -– NCBO, Mayo Clinic College of Medicine, U.S.A
Elaine Collier -– National Center for Research Resources, National Institutes of Health, U.S.A
Lindsay G. Cowell -– Center for Computational Immunology, Duke University, U.S.A
Jana T. Eppig -– The Jackson Laboratory, U.S.A
Yong Gao -– Massachusetts General Hospital, Harvard Medical School, U.S.A
Louis J. Goldberg -– Oral Biology, University at Buffalo, U.S.A
Peter Good -– National Human Genome Research Institute, U.S.A
Jeffrey S/ Grethe -- University of San Diego
Kristel Hackett -– MGH Laboratory of Computer Science, U.S.A
Frank Hartel -– National Cancer Institute, National Institutes of Health, U.S.A
Winston Hide -– SANBI, University of the Western Cape, South Africa
Oliver Hofmann -– SANBI, University of the Western Cape, South Africa
Ingvar Johansson -– IFOMIS, Saarland University, Germany
Waclaw Kusnierczyk -- Norwegian University of Science and Technology, Trondheim
Dirk Lanzerath -– German Reference Centre for Ethics in the Life Sciences, Germany
Suzanna Lewis -– NCBO, Lawrence Berkeley National Laboratory, U.S.A
Jose (Onard) Mejino -– Structural Informatics Group, University of Washington, U.S.A
Chris Mungall -– NCBO, Lawrence Berkeley National Laboratory, U.S.A
Fabian Neuhaus -– NCBO, University at Buffalo, U.S.A
Alan L. Rector -- Computer Science, University of Manchester, U.K.
Richard H. Scheuermann -– Pathology, U.T. Southwestern Medical Center, U.S.A
Lynn Schriml -- The Institute for Genomic Research, Rockville MD, U.S.A.
Stefan Schulz -– Medical Informatics, Freiburg University Hospital, Germany
Kent A. Spackman -– Medical Informatics, Oregon Health & Science University, U.S.A
Barry Smith -– NCBO, University at Buffalo, U.S.A
Nicole Washington -- NCBO, Lawrence Berkeley National Labs., Berkeley CA, U.S.A.
Monte Westerfield -– Institute of Neuroscience, University of Oregon, U.S.A
Owen White -– The Institute for Genomic Research, Rockville MD, U.S.A
Neil Williams -– Philosophy, University at Buffalo, U.S.A
Venue
Inn at the Colonnade 4 West University Parkway Baltimore, Maryland 21218 Telephone: +1 410 235 5400 Fax: +1 410 235 5572
The Inn at the Colonnade is located across from Johns Hopkins University less than four miles from Baltimore's CBD and historic Inner Harbor, and only 20 minutes from BWI International Airport.
A block of rooms have been reserved for those Workshop participants and attendees wishing to stay at the Inn at the Colonnade. Reservations may be made by calling 1-800-222-TREE. When making reservations, workshop participants and attendees are asked to identify themselves as being a member of the NCBO group. All reservations must be guaranteed for late arrival by charging to a major credit card. Workshop participants and attendees are encouraged to make room reservations no later than 10/15/06. After 10/15/06, the Inn at the Colonnade may offer unused rooms held in the NCBO block to other customers. Reservations requested by Workshop participants and attendees after 10/15/06 will be accepted by the Inn at the Colonnade based upon availability and prevailing rates.
Links and Literature
The workshop is associated with FOIS 2006 and KRMed 2006.
Amarnath Gupta et alia: Towards a formalization of disease-specific ontologies for neuroinformatics.
Cornelius Rosse, Anand Kumar, Jose LV Mejino Jr, Daniel L Cook, Landon T Detwilern and Barry Smith, “A Strategy for Improving and Integrating Biomedical Ontologies”
Barry Smith, Werner Ceusters, Anand Kumar and Cornelius Rosse, “On Carcinomas and Other Pathological Entities”, Comparative and Functional Genomics
Some papers on SNOMED.