:Images

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To help PATO curators find appropriate terms there should be where possible images of exemplar instances as part of the ontology

Contents

Proposal

  • Images will be collected in a repository (eg obo cvs - remember to use cvs admin -kb)
  • Submission of images in the tracker highly encouraged, especially for obscure shape terms
  • Images can be submitted either by attaching a file in the tracker, or pasting a URL
  • PATO editor will collect these into the repository, giving each an ID
  • These can be automatically displayed in the OE2 image plugin

Tracking images

these can be kept in either cvs/obo/website/images or in cvs/obo/ontology/phenotype/images. They can then be auto-published onto a server allowing software to automatically fetch the image.

Directory organisation

Each time an image of some instance of PATO is submitted, it should go into a directory named after the pato class. Metadata on the image can be optionally attached in a file of the same name with a different prefix

 images/
   PATO:0001363/
     spiral_bacterium.jpg
     spiral_bacterium.txt
   PATO:0001797/
     clubbed_foot1.jpg
     clubbed_foot1.owl

We don't need to standardize on metadata for now - a free text description should be sufficient, but structured descriptions are also welcome.

Viewing images

  • OBO-Edit2
  • OBD
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