Difference between revisions of "Main Page"
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| [http://wiki.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies NCBC Scientific Ontologies Working Group] | | [http://wiki.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies NCBC Scientific Ontologies Working Group] | ||
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| + | === Software === | ||
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| + | *[http://bioportal.bioontology.org Bioportal:Main_Page] - Main page for accessing BioPortal | ||
| + | *[[OboInOwl:Main_Page]] - Mapping between OBO and OWL formats | ||
| + | *[[Phenote:Main_Page]] - A Phenotype Annotation Tool using Ontologies | ||
| + | *[[NCBO-OOR Development]] - Documentation on how the Open Ontology Repository community can customize and advance BioPortal capabilities. | ||
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| + | === User Support Documentation === | ||
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| + | * [[NCBO REST services]] - Documentation on how to use BioPortal functionality as Web services | ||
| + | * [[BioPortal UI URLs]] - Documentation on how to link back to BioPortal UI pages | ||
| + | * [http://www.bioontology.org/wiki/index.php/SampleCodeCookbook Code samples] - Sample code for common tasks with BioPortal Web services | ||
| + | * [[Annotator Web service]] - Documentation & information about the NCBO Annotator | ||
| + | * [[Resource Index]] - Documentation & information about the annotation-based NCBO biomedical Resources Index | ||
| + | * ''Retired'' -> See [[BioPortal REST services]] for access to UMLS content. [[UMLS_REST_Services]] - Documentation on how to use our ''prototype'' UMLS services (NetKernel) | ||
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Note that each ontology lives in its own wikispace which corresponds to the [[OBO:IDSpace]] of that ontology. Note for wiki editors: all wiki pages that are to be considered local to a particular ontology should be prefixed with that IDSpace. | Note that each ontology lives in its own wikispace which corresponds to the [[OBO:IDSpace]] of that ontology. Note for wiki editors: all wiki pages that are to be considered local to a particular ontology should be prefixed with that IDSpace. | ||
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=== Research projects and Prototypes === | === Research projects and Prototypes === | ||
Revision as of 11:55, 21 April 2011
Welcome to the NCBO Public WIKI. This WIKI provides information about collaborative ontology development efforts, dissemination events conducted by the NCBO and publically shared materials from the NCBO. Please visit our Main Site for more information and materials.
Software
- Bioportal:Main_Page - Main page for accessing BioPortal
- OboInOwl:Main_Page - Mapping between OBO and OWL formats
- Phenote:Main_Page - A Phenotype Annotation Tool using Ontologies
- NCBO-OOR Development - Documentation on how the Open Ontology Repository community can customize and advance BioPortal capabilities.
User Support Documentation
- NCBO REST services - Documentation on how to use BioPortal functionality as Web services
- BioPortal UI URLs - Documentation on how to link back to BioPortal UI pages
- Code samples - Sample code for common tasks with BioPortal Web services
- Annotator Web service - Documentation & information about the NCBO Annotator
- Resource Index - Documentation & information about the annotation-based NCBO biomedical Resources Index
- Retired -> See BioPortal REST services for access to UMLS content. UMLS_REST_Services - Documentation on how to use our prototype UMLS services (NetKernel)
Ontology Development Area
Below are wikis for some of the current OBO ontologies. Each wiki is housed on the bioontologies.org wiki, in its own partition (wikispace) of the main wiki
- BRO:Main_Page - Biomedical Resource Ontology
- PATO:Main_Page - An ontology of phenotypic qualities
- RO:Main_Page - OBO Relations ontology
- CARO:Main_Page - Reference anatomical ontology
- CL:Main_Page - OBO Cell ontology
- SO:Main_Page - Sequence Ontology
- Disease:Main_Page - Disease Ontology, and other ontologies pertaining to diseases and disorders
- OCI:Main_Page - Ontology of Clinical Investigation
- NPO:Main_Page - NanoParticle Ontology
Note that each ontology lives in its own wikispace which corresponds to the OBO:IDSpace of that ontology. Note for wiki editors: all wiki pages that are to be considered local to a particular ontology should be prefixed with that IDSpace.
Research projects and Prototypes
- RDF Triple Stores - Notes, learning and how-tos regarding uploading data to various triple stores (Nipun Bhatia)
- Path to Root - Project for consuming the path to root and other OBS rest services (Nipun Bhatia)
- PURL Server - Instructions on how to set-up a PURL server and create Master-Slave architecture for redundancy (Nipun Bhatia)
- Ontology Recommender Web service - Documentation & information about the NCBO Ontology Recommender (Clement Jonquet)
- Annotation Summarizer - Project utilizing OBS REST services to derive information from datasets referencing ontologies in BioPortal (Rob Tirrell)
- Lexicon Builder - Project for creating a service that allows building of custom lexicons from bioportal ontologies. (Gautam Parai)
- Medline Analysis - Project for applying natural language processing methods on Medline to analyze the frequency and syntactic type distribution of ontology terms. (Rong Xu)
- MetaMap Installation - Project to install a custom MetaMap using the NCBO data in order to integrate it in the Annotator Web service workflow. (Tejaswi Tenneti)