DRAFT AGENDA

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Preliminary Agenda

Thursday, March 27, 2008


Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD)

  • 9:00am Registration and Continental Breakfast
  • 9:30am Participant Self-Introductions
  • Session 1 - Biology of Pathways and Networks and Associated Data Resources (Moderator: TBD)
Potential presenters:
Sealfon, Gough, Fiona Brinkman, d'Eustachio, Srinivasan
Potential topics:
signalling pathways, metabolic pathways, ...
regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
granularity (molecular, cellular, physiological) ...
  • 10:00am
  • 11:00am Refreshment Break
  • 11:15am
  • 12:30pm Lunch Break
  • 1:30pm Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Ruttenberg)
Potential presenters:
Ma'ayan, Rzhetsky, Scheuermann, Splendiani
  • 3:30pm Refreshment Break
  • 3:45pm Session 3 - Introduction to Ontology (Moderator: Smith)
Potential presenters
Smith
  • 5:00pm End of Day 1

Friday, March 28, 2008 - NETWORK DAY

  • 8:30am Continental Breakfast
  • 9:00am Session 4: State-of-the-art in pathway ontologies (TBD) -

(Moderator: Richard Scheuermann)

Potential presenters:
Fukuda, Sander, Srinivasan
  • 10:45am Refreshment Break
  • 11:00am Session 4 - Existing Resources in Network Ontology (Moderator: TBD)
Presenters:
Balaji S. Srinivasan: Current Progress on Network Ontology
  • 1pm Lunch Break
  • 2:00 Session 5 - Gaps in Network Ontology (Moderator: Yves Lussier)
Presenters:
Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions
  • 4:00pm End of Day 2