Difference between revisions of "Toolbox"

Latest revision as of 14:42, 20 September 2007

TBDB (TB Data + Microarray)

SMD (Stanford Microarray Data)

Virulence Factor DB

Dengue Case Data

Insect/Vector Epidemiological Data (Gates Funded)

Proteomics Data (comparative data on strains of pathogens)

GOA for plants adn animals (response to other organism)

Sequence data for Influenza (infected animal)

NIAID -> PIR

Univ. of Michigan: Vaccine DB

PathPort: The Pathogen Portal Project

GO [1] (PAMGO [2], Immune System Process)

FMA [3]

CARO [4]

D.O. [5]

EnvO [6]

ChEBI [7]

PRO [8]

OBI [9]

scope

term list

BFO type

taxonomy

additional relations

Contributions:

Univ. of Michigan: Brucellosis

Crete: Vector-born diseases (Malaria)

CSU: Dengue

UT Southwestern: Pathogen-related terms

Cleveland Clinic: Infective endocarditis

MITRE: Influenza

Mt. Sinai: Influenza

@@ Line 22: / Line 22: @@
 NIAID -> PIR
+Univ. of Michigan: Vaccine DB
+[http://pathport.vbi.vt.edu/pathinfo/ PathPort]: The Pathogen Portal Project
 == Existing Ontologies ==
-GO (PANGO, Immune System Process)
+GO [http://www.geneontology.org/] (PAMGO [http://pamgo.vbi.vt.edu/], Immune System Process)
-FMA
+FMA [http://sig.biostr.washington.edu/projects/fm/]
-CARO
+CARO [http://www.bioontology.org/wiki/index.php/CARO:Main_Page]
-D.O.
+D.O. [http://diseaseontology.sourceforge.net/]
-EnvO
+EnvO [http://www.obofoundry.org/cgi-bin/detail.cgi?id=envo]
-ChEBI
+ChEBI [http://www.ebi.ac.uk/chebi/]
-PRO
+PRO [http://pir.georgetown.edu/pro/]
-Pathogen
+OBI [http://obi.sourceforge.net/index.php]
 == Agenda: ==
@@ Line 55: / Line 59: @@
 additional relations
+== Future plans ==
+Contributions:
+Univ. of Michigan: Brucellosis
+Crete: Vector-born diseases (Malaria)
+CSU: Dengue
+UT Southwestern: Pathogen-related terms
+Cleveland Clinic: Infective endocarditis
+MITRE: Influenza
+Mt. Sinai: Influenza