Difference between revisions of "PATO Meeting"

Revision as of 11:17, 4 December 2006

General Information and Registration

The National Center for Biomedical Ontology will host a two-day meeting focused on the Phenotype and Trait Ontology (PATO) December 1-2, 2006 at Stanford University in Palo Alto, CA.

Register here.

Agenda

Media:Pheno_workshop_Dec2006.pdf

Minutes and Powerpoint Slides

Minutes from Day 2 Media:Meeting_Notes.pdf

Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature Media:GullyBurns.ppt

Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt Media:AlexanderGarcia.ppt

Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing Media:Adrien Coulet.pdf

Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics Media:TinaHernandez.ppt

James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals Media:JamesReecy.ppt

Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research Media:VictoriaPetri.ppt

Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration Media:CarolBastiani.ppt

Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease Media:JananEppig.ppt

Rex Chisholm: Phenotype curation tool and ontologies at dictyBase Media:RexChisholm.ppt

Minna Lehvaslaiho: HIV Media:MinnaLehvaslaiho.ppt

Eurie Hong: Yeast Media:EurieHong.ppt

Tanya Berardini: Arabidopsis Media:TanyaBerardini.ppt

Christopher Smith: Insect behavior Media:ChristopherSmith.ppt

Michael Ashburner: Drosophila (live demo, no slides)

Maryann Martone: BIRN

Jim Balhoff: NESCENT Media:JimBalhoff.pdf

Venue

Stanford University Clark Center, room S360

Directions to Stanford Medical Center

Map of Stanford Medical Center--see "C", Clark Center

Directions on taking Free Marguerite Shuttle Bus--take Line A to Medical Center

Accommodations

We aren't reserving a block of rooms anywhere, but these local hotels are close by and have Stanford shuttle service.

@@ Line 12: / Line 12: @@
 Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature [[Media:GullyBurns.ppt]]
 Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt [[Media:AlexanderGarcia.ppt]]
 Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing [[Media:Adrien Coulet.pdf]]
 Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics [[Media:TinaHernandez.ppt]]
 James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals [[Media:JamesReecy.ppt]]
 Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research [[Media:VictoriaPetri.ppt]]
 Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration [[Media:CarolBastiani.ppt]]
 Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease [[Media:JananEppig.ppt]]
 Rex Chisholm: Phenotype curation tool and ontologies at dictyBase [[Media:RexChisholm.ppt]]
 Minna Lehvaslaiho: HIV [[Media:MinnaLehvaslaiho.ppt]]
 Eurie Hong: Yeast [[Media:EurieHong.ppt]]
 Tanya Berardini: Arabidopsis [[Media:TanyaBerardini.ppt]]
 Christopher Smith: Insect behavior [[Media:ChristopherSmith.ppt]]
 Michael Ashburner: Drosophila (live demo, no slides)
 Maryann Martone: BIRN
 Jim Balhoff: NESCENT [[Media:JimBalhoff.pdf]]
 ==Venue ==