Difference between revisions of "DRAFT AGENDA"

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'''Thursday, March 27, 2008'''  
 
'''Thursday, March 27, 2008'''  
 
 
  
 
Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD)
 
Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD)
Line 11: Line 9:
 
* 9:30am Participant Self-Introductions
 
* 9:30am Participant Self-Introductions
  
* Session 1 - '''Biology of Pathways and Networks and Associated Data Resources (Moderator: TBD)'''
+
* Session 1 - '''Biology of Pathways and Networks (Moderator: TBD)'''
  
 
:Potential presenters:  
 
:Potential presenters:  
::Sealfon, Gough, Fiona Brinkman, d'Eustachio, Srinivasan'''
+
::Stuart Sealfon
 +
::Nancy Gough
 +
::Chris Sander
 +
::Yves Lussier
 +
::Fiona Brinkman
 +
 
 
:Potential topics:  
 
:Potential topics:  
 
::signalling pathways, metabolic pathways, ...
 
::signalling pathways, metabolic pathways, ...
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:Potential presenters:  
 
:Potential presenters:  
::Ma'ayan, Rzhetsky, Scheuermann, Splendiani
+
::Avi Ma'ayan
 +
::Peter Lyster
 +
::Andre Rhzetsky
 +
::Oliver Ruebenacker
 +
::Richard Scheuermann
 +
::Andrea Splendiani  
  
 
* 3:30pm Refreshment Break
 
* 3:30pm Refreshment Break
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:Potential presenters
 
:Potential presenters
::Smith
+
::Barry Smith
 +
::J. L. E. Mejino Jr.
  
 
* 5:00pm End of Day 1  
 
* 5:00pm End of Day 1  
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* 8:30am Continental Breakfast
 
* 8:30am Continental Breakfast
  
* 9:00am Session 4: '''State-of-the-art in pathway ontologies (TBD) -  
+
* 9:00am Session 4: '''Current Approaches to Pathway and Network Ontology (TBD) -  
 
(Moderator: Richard Scheuermann)'''
 
(Moderator: Richard Scheuermann)'''
  
 
:Potential presenters:
 
:Potential presenters:
::Fukuda, Sander, Srinivasan
+
::Ken Fukuda: INOH Pathway Database
 +
::Peter d'Eustachio: Reactome
 +
::Balaji S. Srinivasan
 +
::Chris Mungall
  
 
* 10:45am  Refreshment Break
 
* 10:45am  Refreshment Break
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* 1pm Lunch Break
 
* 1pm Lunch Break
  
* 2:00 Session 5 - Gaps in Network Ontology (Moderator: Yves Lussier)
+
* 2:00 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)
 +
 
 +
:Potential presenters:
 +
::Lindsay Cowell
 +
::Bill Bug
  
::Presenters:
 
 
:::Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions
 
:::Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions
  
 
* 4:00pm End of Day 2
 
* 4:00pm End of Day 2

Revision as of 10:44, 4 February 2008

Preliminary Agenda

Thursday, March 27, 2008

Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD)

  • 9:00am Registration and Continental Breakfast
  • 9:30am Participant Self-Introductions
  • Session 1 - Biology of Pathways and Networks (Moderator: TBD)
Potential presenters:
Stuart Sealfon
Nancy Gough
Chris Sander
Yves Lussier
Fiona Brinkman
Potential topics:
signalling pathways, metabolic pathways, ...
regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
granularity (molecular, cellular, physiological) ...
  • 10:00am
  • 11:00am Refreshment Break
  • 11:15am
  • 12:30pm Lunch Break
  • 1:30pm Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Ruttenberg)
Potential presenters:
Avi Ma'ayan
Peter Lyster
Andre Rhzetsky
Oliver Ruebenacker
Richard Scheuermann
Andrea Splendiani
  • 3:30pm Refreshment Break
  • 3:45pm Session 3 - Introduction to Ontology (Moderator: Smith)
Potential presenters
Barry Smith
J. L. E. Mejino Jr.
  • 5:00pm End of Day 1

Friday, March 28, 2008 - NETWORK DAY

  • 8:30am Continental Breakfast
  • 9:00am Session 4: Current Approaches to Pathway and Network Ontology (TBD) -

(Moderator: Richard Scheuermann)

Potential presenters:
Ken Fukuda: INOH Pathway Database
Peter d'Eustachio: Reactome
Balaji S. Srinivasan
Chris Mungall
  • 10:45am Refreshment Break
  • 11:00am Session 4 - Existing Resources in Network Ontology (Moderator: TBD)
Presenters:
Balaji S. Srinivasan: Current Progress on Network Ontology
  • 1pm Lunch Break
  • 2:00 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)
Potential presenters:
Lindsay Cowell
Bill Bug
Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions
  • 4:00pm End of Day 2