Networks
Workshop on Ontologies of Cellular Networks
Goals
The National Center for Biomedical Ontology will host a two-day workshop focused on ontologies of cellular networks.
The goals of this workshop are:
- 1. to provide an introduction to the basic tools and methods of ontology
- 2. to foster networking of, and enhanced coordination between, those groups already working on ontologies of cellular networks
- 3. to identify problems which must be solved if ontology methods are to be extended to represent biological mechanisms in greater detail
- 4. to promote further ontology development in this area with the goal of accelerating our ability to understand basic biological phenomena and to leverage experimental data
Agenda Template
Wednesday, March 27, 2008
- 9.00am Registration and Continental Breakfast
- 10.00am: Session 1
- Moderator
- Introductions
- 10am Participant Self-Introductions
- 10.15am Introduction to Ontology
- 10.45am Coffee
- 11.15am The OBO Foundry
- 11.45am
- 12.45pm Lunch
- 2.00-5.00pm Session 2
- Moderator:
- Cellular Networks and Cellular Network Data
Thursday, March 28, 2008
- 8.30am Continental Breakfast
- 9.00am Session 2
- Moderator:
- Ontologies of Cellular Networks: Alternative Approaches
- Session 3
- 12.45pm Lunch Break
- Session 4
- Ontologies of Cellular Networks: The Next Steps
- Moderator: Suzanna Lewis (NCBO, Berkeley)
- 2.00-4.00pm
Participants
Participants will include:
Robert Arp (NCBO / Buffalo)
Gary Bader (BioPAX / University of Toronto)
Helen Berman (PDB / Ruttgers)
William Bug (BIRN Ontology Task Force, UC San Diego)
Werner Ceusters (Ontology Research Group, University at Buffalo)
Lindsay Cowell (Infectious Disease Ontology / Duke University)
Emek Demir (BioPAX / Memorial Sloan-Kettering Cancer Center)
Peter D'Eustachio (Reactome / New York University)
Ken Fukuda (INOH / Tokyo)
Gopal Gopinathrao (Reactome / Cold Spring Harbor Laboratories)
Nancy Gough (Science)
Suzanna Lewis (NCBO, Berkeley)
Joanne Luciana (BioPAX / Harvard Medical School)
Peter Lyster (NIH / NIGMS)
Avi Ma'ayan (Mount Sinai, NY)
J. L. E. Mejino, Jr. (FMA Ontology, University of Washington, Seattle)
Darren Natale (Protein Ontology/PIR, Georgetown University)
Oliver Ruebenacker (Center for Cell Analysis and Modelling / University of Connecticut Health Center)
Alan Ruttenberg (BioPAX / Science Commons)
Andrey Rzhetsky (Chicago)
Chris Sander (BioPAX / Memorial Sloan-Kettering Cancer Center)
Richard Scheuermann (UTexas SW Medical Center)
Stuart Sealfon (Mount Sinai, NY)
Barry Smith (NCBO / Buffalo)
Andrea Splendiani (Medical Informatics, Rennes, France)
Cathy Wu (Protein Ontology/PIR, Georgetown University)
Venue
Hilton Hotel Newark Airport A block of rooms has been set aside for early registrants.
Links
Literature
Current progress in network research
An Evaluation of Ontology Exchange Languages for Bioinformatics