Difference between revisions of "BioPortal REST services"

Latest revision as of 23:00, 16 July 2016

NCBO BioPortal v4.0 REST services are documented at: http://data.bioontology.org/documentation

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-This page documents the signatures for NCBO (and, more specifically, BioPortal) REST services. This list may not be exhaustive.
+NCBO BioPortal v4.0 REST services are documented at: http://data.bioontology.org/documentation
-'''Note''': ''Signatures for BioPortal services have changed in BioPortal 2.0.4 release on January 13th, 2009. This page has the new service URLs. If you have any questions, please contact [mailto:bioontology-support@lists.stanford.edu BioPortal Support].''
-The '''prefix''' for all service URLs in the table below is http://rest.bioontology.org/bioportal/
-== List all the latest version of ontologies ==
-* '''Signature''': ./ontologies
-* '''Example''': http://rest.bioontology.org/bioportal/ontologies
-==  Find a specific ontology based on a version id ==
-* '''Signature''':  ./ontologies/{ontology version id}
-* '''Example''':  http://rest.bioontology.org/bioportal/ontologies/39002
-==  Find all versions of an ontology form a virtual ontology id ==
-* '''Signature''':./virtual/{virtual ontology id}
-* '''Example''': http://rest.bioontology.org/bioportal/virtual/1104
-==  Download an ontology file ==
-* '''Description''': Download the file (.obo, .owl) corresponding to the given ontology version ID.
-* '''Signature''':   ./ontologies/download/{ontology version id}
-* '''Example''': http://rest.bioontology.org/bioportal/ontologies/download/39002
-==  Get version ids based on a virtual ontology id ==
-* '''Signature''': ./ontologies/versions/{ontology id}
-* '''Example''': http://rest.bioontology.org/bioportal/ontologies/versions/1104
-==  Get latest version of an ontology id ==
-* '''Signature''':   ./virtual/{ontology_id}
-* '''Example''': http://rest.bioontology.org/bioportal/virtual/1104
-==  Get concept id ==
-* '''Signature''': ./concepts/{ontology version id}/{concept id}
-* '''Example''': http://rest.bioontology.org/bioportal/concepts/39002/BRO:Resource
-==  Get all root concepts for an ontology id ==
-* '''Signature''': ./concepts/{ontology version id}/root
-* '''Example''': http://rest.bioontology.org/bioportal/concepts/39002/root
-==  Get concept for latest ontology version id ==
-* '''Signature''': ./virtual/{ontology id}/{concept id}
-* '''Example''': http://rest.bioontology.org/bioportal/virtual/1104/BRO:Resource
-==  Search BioPortal ==
-* '''Signature''': ./search/{query}[?{optional args}]
-* '''Example''': http://rest.bioontology.org/bioportal/search/Gene
-* You can use multiple query terms, separated by a space, for example: [http://rest.bioontology.org/bioportal/search/lung%20disease http://rest.bioontology.org/bioportal/search/lung disease]
-* '''Optional arguments:'''
-** ontologyids=<ontologyid>,<ontologyid>… - limits the search to specific ontologies (default: all ontologies)
-** isexactmatch=[1/0] – match the entire concept name (default: 0)
-** includeproperties=[1/0] – include attributes in the search (default: 0)
-** pagesize=<pagesize> - the number of results to display in a single request (default: all)
-** pagenum=<pagenum> - the page number to display (pages are calculated using <total results>/<pagesize>) (default: 1)
-** '''Example''': http://rest.bioontology.org/bioportal/search/software/?ontologyids=1104&isexactmatch=1
-==  List all ontology categories id ==
-* '''Signature''':   ./categories
-* '''Example''': http://rest.bioontology.org/bioportal/categories

Difference between revisions of "BioPortal REST services"

Latest revision as of 23:00, 16 July 2016

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