Difference between revisions of "DRAFT AGENDA"
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'''Thursday, March 27, 2008''' | '''Thursday, March 27, 2008''' | ||
| − | |||
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Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD) | Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD) | ||
| Line 11: | Line 9: | ||
* 9:30am Participant Self-Introductions | * 9:30am Participant Self-Introductions | ||
| − | * Session 1 - '''Biology of Pathways and Networks | + | * Session 1 - '''Biology of Pathways and Networks (Moderator: TBD)''' |
:Potential presenters: | :Potential presenters: | ||
| − | ::Sealfon | + | ::Stuart Sealfon |
| + | ::Nancy Gough | ||
| + | ::Chris Sander | ||
| + | ::Yves Lussier | ||
| + | ::Fiona Brinkman | ||
| + | |||
:Potential topics: | :Potential topics: | ||
::signalling pathways, metabolic pathways, ... | ::signalling pathways, metabolic pathways, ... | ||
| Line 30: | Line 33: | ||
:Potential presenters: | :Potential presenters: | ||
| − | ::Ma'ayan | + | ::Avi Ma'ayan |
| + | ::Peter Lyster | ||
| + | ::Andre Rhzetsky | ||
| + | ::Oliver Ruebenacker | ||
| + | ::Richard Scheuermann | ||
| + | ::Andrea Splendiani | ||
* 3:30pm Refreshment Break | * 3:30pm Refreshment Break | ||
| Line 37: | Line 45: | ||
:Potential presenters | :Potential presenters | ||
| − | ::Smith | + | ::Barry Smith |
| + | ::J. L. E. Mejino Jr. | ||
* 5:00pm End of Day 1 | * 5:00pm End of Day 1 | ||
| Line 45: | Line 54: | ||
* 8:30am Continental Breakfast | * 8:30am Continental Breakfast | ||
| − | * 9:00am Session 4: ''' | + | * 9:00am Session 4: '''Current Approaches to Pathway and Network Ontology (TBD) - |
(Moderator: Richard Scheuermann)''' | (Moderator: Richard Scheuermann)''' | ||
:Potential presenters: | :Potential presenters: | ||
| − | ::Fukuda | + | ::Ken Fukuda: INOH Pathway Database |
| + | ::Peter d'Eustachio: Reactome | ||
| + | ::Balaji S. Srinivasan | ||
| + | ::Chris Mungall | ||
* 10:45am Refreshment Break | * 10:45am Refreshment Break | ||
| Line 60: | Line 72: | ||
* 1pm Lunch Break | * 1pm Lunch Break | ||
| − | * 2:00 Session 5 - Gaps in Network Ontology (Moderator: | + | * 2:00 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg) |
| + | |||
| + | :Potential presenters: | ||
| + | ::Lindsay Cowell | ||
| + | ::Bill Bug | ||
| − | |||
:::Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions | :::Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions | ||
* 4:00pm End of Day 2 | * 4:00pm End of Day 2 | ||
Revision as of 10:44, 4 February 2008
Preliminary Agenda
Thursday, March 27, 2008
Day 2 second session - approach for extending current pathway ontologies into an OBO Foundry framework (TBD)
- 9:00am Registration and Continental Breakfast
- 9:30am Participant Self-Introductions
- Session 1 - Biology of Pathways and Networks (Moderator: TBD)
- Potential presenters:
- Stuart Sealfon
- Nancy Gough
- Chris Sander
- Yves Lussier
- Fiona Brinkman
- Potential topics:
- signalling pathways, metabolic pathways, ...
- regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
- types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
- granularity (molecular, cellular, physiological) ...
- 10:00am
- 11:00am Refreshment Break
- 11:15am
- 12:30pm Lunch Break
- 1:30pm Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Ruttenberg)
- Potential presenters:
- Avi Ma'ayan
- Peter Lyster
- Andre Rhzetsky
- Oliver Ruebenacker
- Richard Scheuermann
- Andrea Splendiani
- 3:30pm Refreshment Break
- 3:45pm Session 3 - Introduction to Ontology (Moderator: Smith)
- Potential presenters
- Barry Smith
- J. L. E. Mejino Jr.
- 5:00pm End of Day 1
Friday, March 28, 2008 - NETWORK DAY
- 8:30am Continental Breakfast
- 9:00am Session 4: Current Approaches to Pathway and Network Ontology (TBD) -
(Moderator: Richard Scheuermann)
- Potential presenters:
- Ken Fukuda: INOH Pathway Database
- Peter d'Eustachio: Reactome
- Balaji S. Srinivasan
- Chris Mungall
- 10:45am Refreshment Break
- 11:00am Session 4 - Existing Resources in Network Ontology (Moderator: TBD)
- Presenters:
- Balaji S. Srinivasan: Current Progress on Network Ontology
- Presenters:
- 1pm Lunch Break
- 2:00 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)
- Potential presenters:
- Lindsay Cowell
- Bill Bug
- Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions
- 4:00pm End of Day 2