DRAFT AGENDA

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Preliminary Agenda

Thursday, March 27, 2008 - PATHWAY DAY

  • 9:00am Registration and Continental Breakfast
  • Session 1 - Introduction
  • 10:00am Participant Self-Introductions
  • 10:15am Barry Smith: Ontology, the OBO Foundry, and the Scope of this Meeting
  • 11:00am Refreshment Break
  • 11:15am Session 2: Types of Pathways (Moderator: TBD)

Topics: signalling pathways, metabolic pathways, ...; what are the nodes? (molecules, pools of molecules?)

  • 1:00pm Lunch Break
  • 2:00pm Session 3 - Existing Resources in Pathway Ontology (Moderator: TBD)
Presenters:
Ken Fukuda: INOH Pathway Database
Peter d'Eustachio: Reactome
BioPAX
  • 3:15pm Refreshment Break
  • 3:30pm Session 4 - Gaps in Pathway Ontology (Moderator: Alan Ruttenberg)
Presenters:
  • 5:00pm End of Day 1

Friday, March 28, 2008 - NETWORK DAY

  • 8:30am Continental Breakfast
  • 9:00am Session 3: Types of Networks (Moderator: Richard Scheuermann)

Topics: regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)

Types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
Granularity (molecular, cellular, physiological) ...
Presenters?
  • 10:45am Refreshment Break
  • 11:00am Session 4 - Existing Resources in Network Ontology (Moderator: TBD)
Presenters:
Balaji S. Srinivasan: Current Progress on Network Ontology
  • 1pm Lunch Break
  • 2:00 Session 5 - Gaps in Network Ontology (Moderator: Yves Lussier)
Presenters:
Yves Lussier: Cellular Networks and their Surroundings: Tissues, the Extracellular Matrix, and Cell-Environment Interactions
  • 4:00pm End of Day 2