DRAFT AGENDA

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Preliminary Agenda

Thursday, March 27, 2008

  • 9:00am Registration and Continental Breakfast
  • 9:30am Participant Self-Introductions
  • 10:00am Session 1 - Biology of Pathways and Networks (Moderator: Yves Lussier)
Potential presenters:
Fiona Brinkman
Nancy Gough
Yves Lussier
Chris Sander
Stuart Sealfon
Potential topics:
signalling pathways, metabolic pathways, ...
regulatory networks, interaction networks, gene expression correlation networks, physiological networks, neurocurrent networks, water balance networks, social networks, co-citation networks ...)
types of regulation (hormone regulation, organismal regulation, thermal regulation, blood pressure regulation ...)
granularity (molecular, cellular, physiological) ...
cellular networks and their surroundings: tissues, the extracellular matrix, and cell-environment interactions
  • 11:00am Refreshment Break
  • 11:15am
  • 12:30pm Lunch Break
  • 1:30pm Session 2 - Computational Analysis of Pathway and Network Data (Moderator: Alan Ruttenberg)
Potential presenters:
Avi Ma'ayan
Peter Lyster
Andre Rhzetsky
Oliver Ruebenacker
Richard Scheuermann
Andrea Splendiani
  • 3:30pm Refreshment Break
  • 3:45pm Session 3 - Introduction to Ontology (Moderator: Barry Smith)
Potential presenters
Lindsay Cowell
Barry Smith
J. L. E. Mejino Jr.
  • 5:00pm End of Day 1

Friday, March 28, 2008 - NETWORK DAY

  • 8:30am Continental Breakfast
  • 9:00am Session 4: Current Approaches to Pathway and Network Ontology (Moderator: Richard Scheuermann)
Potential presenters:
Bill Bug
Peter d'Eustachio: Reactome
Ken Fukuda: INOH Pathway Database
Darren Natale: Protein Ontology
Balaji S. Srinivasan
  • 10:45am Refreshment Break
  • 11:00am
  • 12.30pm Lunch Break
  • 1:30 Session 5 - Gaps in Network Ontology (Moderator: Alan Ruttenberg)
Open discussion; resenters and topics to be decided
(example:) Approaches to extending the OBO Foundry to include pathway and network ontologies
  • 4:00pm End of Day 2