Difference between revisions of "Meetings and Events"

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== NCBO-Sponsored Dissemination and Training Events 2005-2009 ==
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== NCBO-Sponsored Dissemination and Training Events 2005-2015 ==
  
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'''The Future of the Foundational Model of Anatomy [http://groups.google.com/group/fma-owl-2009/web/agenda?hl=en ↑] '''  
+
'''[http://icbo2015.fc.ul.pt/ International Conference on Biomedical Ontology]''', Lisbon, July 27-30, 2015
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/The_Role_of_Ontology_in_Big_Cancer_Data The Role of Ontology in Big Cancer Data]''', National Cancer Institute, Bethesda, MD, May 12-13, 2015
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Information_Artifact_Ontologies Information Artifact Ontologies]''', Workshop organized as part of [http://fois2014.inf.ufes.br/p/home.html FOIS], Rio de Janeiro, Brazil, September 22, 2014
 +
 
 +
'''[http://icbo14.com/ 5th International Conference on Biomedical Ontologies (ICBO 2014)]''', Houston, TX, October 6-9, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Protein_Ontology_Workshop Protein Ontology Workshop]'''
 +
*Georgetown, DC, June 18-19, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Tutorial on Ontology for Image Informatics]'''
 +
*Buffalo, NY, June 23, 2014
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/Ontology_and_Imaging_Informatics Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop]'''
 +
*Buffalo, NY, June 24-25, 2014.
 +
 
 +
'''[[NCBO Hackathon 2013]]'''
 +
* Stanford University, Stanford, CA, April 29-30, 2013
 +
* ''[http://www.certain.com/system/profile/web/index.cfm?PKwebID=0x430788962b&varPage=info Registration and Meeting Logistics here]''
 +
 
 +
'''[http://wiki.plantontology.org/index.php/PRO-PO-GO_Meeting PRO-PO-GO Meeting]: Challenges of Ontology Coordination Across Organisms'''
 +
*Buffalo, NY, May 15-16, 2013
 +
*The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.
 +
 
 +
'''[http://ncorwiki.buffalo.edu/index.php/CTSA_Ontology_Workshop Second CTSA Ontology Workshop]'''
 +
*Orlando, FL, February 11-12, 2013
 +
*This is the second meeting of the new [https://www.ctsacentral.org/committee/ikfc-clinical-and-translational-science-affinity-group-ctso-ag IKFC Clinical and Translational Science Ontology Affinity Group] which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.
 +
 
 +
'''[[SWAT4LS2012 Tutorial | SWAT4LS2012 Tutorial]]'''
 +
* Paris, November 29, 2012
 +
 
 +
'''[http://www.amia.org/amia2012/tutorials Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities]'''
 +
*AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.
 +
 
 +
'''[[Media:NCBO_NCBC_Showcase_2.pdf|Overview Presentation for the NCBC Showcase]]'''
 +
*November 8-9, 2012
 +
 
 +
'''[https://www.nescent.org/sites/academy/Anatomy_ontologies Course on Anatomy Ontologies]'''
 +
*[http://nescent.org National Evolutionary Synthesis Center], Durham, NC, July 30-August 3, 2012
 +
 
 +
'''[http://www.bio-ontologies.org.uk/ Bio-Ontologies 2012]''' Long Beach, CA July 13-14, 2012
 +
* NCBO Web services: Powering Semantically Aware Applications
 +
'''[http://kr-med.org/icbofois2012/icbo.htm International Conference on Biomedical Ontology], Graz, Austria, July 21-25, 2012.
 +
* Includes Tutorial on '''[[NCBO Web Services and the Development of Semantic Applications]]'''
 +
 
 +
'''[http://www.biocodecommons.org/workshops/sob.html Semantics of Biodiversity]
 +
*University of Kansas Biodiversity Institute, Lawrence, KS, May 16-18, 2012,
 +
*[http://www.youtube.com/playlist?list=PL96F1AA6122B1D837&feature=mh_lolz Barry Smith presentations on Youtube]
 +
 
 +
'''[[Immunology Ontologies and Their Applications in Processing Clinical Data]]
 +
* Buffalo, NY, June 11-13, 2012.
 +
 
 +
'''[http://www.bioontology.org/wiki/index.php/Tutorial:_Introduction_to_Biomedical_Ontology_for_Clinical_and_Translational_Research CTSA Ontology Tutorial]'''
 +
*Baltimore, MD, April 24, 2012.
 +
 
 +
'''[[Clinical and Translational Science Ontology Workshop]]'''
 +
*Baltimore, MD, April 25-26, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies and Their Applications]]'''
 +
*Stanford University, CA, March 15, 2012.
 +
 
 +
'''[[AMIA CRI Demo]]'''
 +
*San Francisco, CA, March 22, 2012.
 +
 
 +
'''[[NCBO Hackathon]]'''
 +
*Stanford University, CA, March 26-27, 2012.
 +
 
 +
'''[[Introduction to Bio-Ontologies]]'''
 +
*New York Botanical Gardens, Bronx, NY, February 5, 2012.
 +
 
 +
'''[[SWAT4LS Tutorial]]''': NCBO Web Services and Development of Semantic Applications
 +
*London, UK, December 7-9, 2011
 +
 
 +
'''[http://2011.biohackathon.org/ DBCLS Hackathon]'''
 +
*Kyoto, Japan, August 22-26, 2011
 +
 
 +
'''2nd International Conference on Biomedical Ontology [http://icbo.buffalo.edu ICBO ↑]'''
 +
*Videos of all presentations and discussions are available [http://icbo.buffalo.edu/2011/videos.pdf here]
 +
*Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.
 +
 
 +
'''How to Build a Biomedical Ontology [http://ontology.buffalo.edu/11/Tutorial_Atlanta_2011.htm ↑] '''
 +
*Atlanta, GA, June 29, 2011.
 +
*[http://www.youtube.com/playlist?list=PL0C7064FCDF588FAB&feature=mh_lolz Barry Smith presentations on Youtube]
 +
 
 +
'''The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research [http://iadr.confex.com/iadr/2011sandiego/webprogram/Session24831.html ↑]'''
 +
*San Diego, CA, March 16-19, 2011.
 +
 
 +
'''Infectious Disease Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/IDO_Workshop_2010 ↑]'''
 +
*Baltimore, MD, December 8-9, 2010.
 +
 
 +
'''Introduction to Ontology Building [http://ncorwiki.buffalo.edu/index.php/An_Introduction_to_Ontology_Building ↑]'''
 +
*Tutorial, University at Buffalo, October 23, 2010.
 +
 
 +
'''Medinfo Workshop on Infectious Disease Ontology[http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology_Workshop_-_Medinfo_2010 ↑]'''
 +
*September 9-15, 2010, Cape Town, South Africa,
 +
 
 +
'''W3C Workshop – RDF Next Steps[http://www.w3.org/2009/12/rdf-ws/ ↑]'''
 +
*June 26-27, 2010, Stanford, CA.
 +
 
 +
'''Formal Ontology in Information Systems [http://fois2010.mie.utoronto.ca ↑]'''
 +
*Toronto, Canada, May 11-14, 2010.
 +
 
 +
'''Ontology Summit 2010: Creating the Ontologists of the Future [http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010 ↑]'''
 +
*March 15-16, 2010, NIST, Gaithersburg, MD
 +
*Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
 +
*[http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2010_Communique Communique]
 +
 
 +
'''3rd Interdisciplinary Ontology Conference [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology10 ↑]'''
 +
*February 26-28, 2010, Keio University, Tokyo, Japan
 +
*Conference co-sponsored with the Japanese Center for Ontological Research
 +
*Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), ''Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting'' (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.
 +
 
 +
''' Ontologies for the Virtual Physiological Human [http://www.vph-noe.eu/vph-events/details/100-ontologies-for-the-virtual-physiological-human-workshop ↑]'''
 +
*February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK
 +
 
 +
'''[[The Future of the Foundational Model of Anatomy]]'''  
 
*November 11-12, 2009, Stanford, CA
 
*November 11-12, 2009, Stanford, CA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]
  
−
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]
+
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ↑]'''
 
*October 10-11, 2009, Buffalo, NY
 
*October 10-11, 2009, Buffalo, NY
 
*Co-sponsored with the University at Buffalo
 
*Co-sponsored with the University at Buffalo
 +
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]
  
−
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]  
+
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ↑]'''
 
*September 3-4, 2009, University of Milan, Biccaca, Italy
 
*September 3-4, 2009, University of Milan, Biccaca, Italy
−
*Co-sponsored by the Italian National Research Council
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*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
 +
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]
  
−
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu ↑]'''
+
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu/2009/ICBO2.htm ↑]'''
 
*July 27-29, 2009, Buffalo, NY  
 
*July 27-29, 2009, Buffalo, NY  
 
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 +
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]
 +
 +
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ↑]'''
 +
*July 25-26, 2009, Buffalo, NY
 +
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
 +
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]
  
 
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]'''  
 
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ↑]'''  
 
*Mar 30-Apr 1, 2009, Miami, FL
 
*Mar 30-Apr 1, 2009, Miami, FL
 
*Co-sponsored by the International Association for Dental Research
 
*Co-sponsored by the International Association for Dental Research
 +
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"]
  
−
'''InterOntology 2009 [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]'''  
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ↑]'''  
−
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan
+
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
−
*Special session on Biomedical Ontologies co-organized with the Japanese Center for Ontological Research  
+
*Co-organized with the Japanese Center for Ontological Research  
  
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]'''  
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ↑]'''  
−
*January 5, 2009, Boston, MA  
+
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 +
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]
  
 
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''
 
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ↑]'''
 
*September 3-4, 2008, Dallas, TX
 
*September 3-4, 2008, Dallas, TX
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]
  
 
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''
 
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ↑]'''
 
*July 19, 2008, Toronto, Canada.
 
*July 19, 2008, Toronto, Canada.
 
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
 
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
 +
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]
  
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''
 
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ↑]'''
 
*June 20, 2008, Minneapolis, MN
 
*June 20, 2008, Minneapolis, MN
−
*Held in conjunction with the [http://www.cce.umn.edu/conferences/evolution/ ↑] Evolution 2008 meeting.
+
*Held in conjunction with the Evolution 2008 meeting.
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 +
*[http://kaboodle.nescent.org/?q=node/58 Report]
 +
 +
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ↑]'''
 +
*May 19-20, 2008, Denver, CO
 +
*NCBO Dissemination Workshop
  
 
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''
 
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ↑]'''
 
*April 12-13, 2008, Buffalo, NY
 
*April 12-13, 2008, Buffalo, NY
 
*NCBO Tutorial (Faculty: Barry Smith)
 
*NCBO Tutorial (Faculty: Barry Smith)
 +
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]
  
 
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]'''  
 
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ↑]'''  
 
*March 27-28, 2008, Newark, NJ
 
*March 27-28, 2008, Newark, NJ
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]
  
−
'''Joint JCOR-NCBO International Biomedical Ontology Dissemination Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ↑]'''
−
*February 26-27, 2008, Tokyo, Japan
+
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]
−
*NCBO Dissemination Workshop
+
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research
−
*Co-sponsored with the Japanese Center for Ontological Research  
 
  
−
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 http://www.dagstuhl.de/07301 ↑]'''
+
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ↑]'''
 
*July 23-27, 2007: Schloss Dagstuhl, Germany
 
*July 23-27, 2007: Schloss Dagstuhl, Germany
 
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 +
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]
  
 
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''
 
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ↑]'''
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*June 20-23, 2007, Schloss Dagstuhl, Germany  
 
*June 20-23, 2007, Schloss Dagstuhl, Germany  
 
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
 
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
 +
 +
'''Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More [http://www.sequenceontology.org/about/so_workshop_immuno.html ↑]'''
 +
*June 12-13th, 2007, University of Utah, Salt Lake City, UT
  
 
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''
 
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ↑]'''
 
*May 16-17 2007, NIH Campus, Bethesda, MD
 
*May 16-17 2007, NIH Campus, Bethesda, MD
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://rctbank.ucsf.edu/home/ocre OCRe Ontology]
  
 
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''
 
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ↑]'''
 
*March 27-30, 2007, Dagstuhl, Germany
 
*March 27-30, 2007, Dagstuhl, Germany
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report]
  
 
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑]  
 
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑]  
 
*December 21, 2006  
 
*December 21, 2006  
−
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides] [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]
+
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]
  
−
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]'''
+
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Announcement]
 
*December 1-2, 2006, Clark Center, Stanford, CA
 
*December 1-2, 2006, Clark Center, Stanford, CA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
  
−
'''Connecting BioPAX to Other Biomedical Ontologies [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ↑]'''  
+
'''Connecting BioPAX to Other Biomedical Ontologies'''  
 
*November 20-21, 2006, MIT, Boston, MA
 
*November 20-21, 2006, MIT, Boston, MA
 
*NCBO Tutorial (Faculty: Barry Smith)
 
*NCBO Tutorial (Faculty: Barry Smith)
  
 
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''
 
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ↑]'''
−
* AMIA Anual Symposium, November 14, 2006, Washington DC
+
*AMIA Anual Symposium, November 14, 2006, Washington DC
 +
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]
  
 
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ↑]'''
 
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ↑]'''
Line 95: Line 237:
  
 
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''
 
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]'''
−
*November 11, 2006, AMIA Annual Symposium, Washington DC
+
*AMIA Annual Symposium, November 11, 2006, Washington DC,
−
*NCBO Dissemination Workshop
+
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]
  
 
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''
 
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]'''
 
*November 8, 2006, Baltimore, MD
 
*November 8, 2006, Baltimore, MD
 
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 +
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication]
  
 
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''
 
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]'''
 
*November 6-7, 2006, John Hopkins University, Baltimore
 
*November 6-7, 2006, John Hopkins University, Baltimore
−
*NCBO Dissemination Workshop organized in association with the Formal Ontology and Information Systems ([http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006]) Conference
+
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference
−
 
 
−
'''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ↑]'''
 
−
*October 14-15, 2006, Buffalo, NY
 
−
*NCBO Dissemination Workshop
 
  
 
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]'''  
 
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ↑]'''  
Line 114: Line 253:
 
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
 
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
  
−
'''Anatomy Ontology Workshop http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''
+
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]'''
 
*September 8-9, 2006, University of Washington, Seattle, WA
 
*September 8-9, 2006, University of Washington, Seattle, WA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 +
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology]
  
 
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]
 
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ↑]
 
*August 27, 2006, Maastricht, Netherlands.
 
*August 27, 2006, Maastricht, Netherlands.
 
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters)  
 
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters)  
 +
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]
  
 
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''
 
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]'''
Line 128: Line 269:
 
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"
 
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]"
 
*Jul 30-August 4, 2006, Fortaleza, Brazil.
 
*Jul 30-August 4, 2006, Fortaleza, Brazil.
−
* Presentation by Michael Ashburner at the Conference In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot.
+
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.
  
−
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''
+
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''.
 
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
 
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
 +
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations;
  
−
'''Ontology Visualization with [Jambalaya http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''
+
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]'''
 
*July 23-26, 2006, Stanford, CA
 
*July 23-26, 2006, Stanford, CA
−
* NCBO Tutorial (Faculty: Chris Callendar)
+
*NCBO Tutorial (Faculty: Chris Callendar)
  
−
'''Scientific Ontologies [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''
+
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]'''
 
*July 17-19, 2006, NIH, Bethesda, MD
 
*July 17-19, 2006, NIH, Bethesda, MD
−
*i2b2, NAMIC and NCBO sponsored SIG session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
+
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
  
 
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''
 
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]'''
 
*July 19, 2006, NIH, Bethesda, MD
 
*July 19, 2006, NIH, Bethesda, MD
 
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
 
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
−
 
+
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]
 +
 
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''
 
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ↑]'''
 
*May 21-24, 2006, Schloss Dagstuhl, Germany
 
*May 21-24, 2006, Schloss Dagstuhl, Germany
Line 155: Line 298:
 
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''
 
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]'''
 
*March 31-April 3, 2006, St. Croix
 
*March 31-April 3, 2006, St. Croix
−
*NCBO Tutorial by Barry Smith at the [Gene Ontology Consortium Meeting http://www.geneontology.org/minutes/20060331_StCroix.pdf]
+
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]
 +
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication]  
  
 
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''
 
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]'''
 
*March 24-25, 2006, Stanford, CA
 
*March 24-25, 2006, Stanford, CA
−
*'''NCBO Dissemination Workshop'''
+
*NCBO Dissemination Workshop
 +
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology
 +
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]
  
 
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''
 
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]'''
 
*March 21-22, 2006, Gaitherburg, MD
 
*March 21-22, 2006, Gaitherburg, MD
 +
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
 +
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]
  
−
 
+
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]'''
−
 
+
*March 6-7, 2006, Bethesda, MD
−
'''Semantic Technology Conference'''
+
*Presentation by Monte Westerfield on Animal Models and Ontologies
−
**March 6-9, 2006, San Jose, CA
 
−
** [http://www.semantic-conference.com/ ↑]
 
−
** Attending:  Deborah McGuinness (Keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar (speaker)
 
−
 
 
−
'''NIH NCRR Animal Models workshop'''
 
−
**March 6-7, 2006, Bethesda, MD
 
−
** Attending: Monte Westerfield
 
−
 
 
−
'''[[Minutes & presentations, March 2-4, 2006 Project meeting|cBio Project Meeting]]'''
 
−
**March 2-4, 2006, Stanford, CA
 
−
** [[Agenda, Project Meeting, Thursday, March 2-Saturday, March 4, 2006|Agenda]]
 
−
**[http://www.smi.stanford.edu/research/cbio/cbio_meeting.html ↑]
 
−
**Entire project, NIH Program & Lead Science officers
 
  
 
'''BIRN ontology workshop'''
 
'''BIRN ontology workshop'''
−
**February 28-March 1, 2006, Stanford, CA
+
[http://www.bioontology.org/wiki/index.php/Workshop_Agenda Agenda]
−
** Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
+
*February 28-March 1, 2006, Stanford, CA
−
*'''NCBO Dissemination Workshop'''
+
*Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN_Mar06.ppt Part 1] [http://ontology.buffalo.edu/smith/ppt/Neuroontology/BIRN%20ONTOLOGY%20WORKSHOP.ppt Part 2]
−
 
+
*NCBO Dissemination Workshop
−
'''NLM vocabulary collection and distribution meeting'''
+
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology
−
**February 27-28, 2006, NLM, Washington, DC
 
−
** Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig
 
−
 
 
−
'''NIAID meeting'''
 
−
**February, 2006, Washington, DC
 
−
**Attending: Mark Musen
 
−
 
 
−
'''cBio Phenotype Annotation tool specification'''
 
−
**February 21-23, 2006, Berkeley, CA
 
−
** Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)
 
−
 
 
−
'''Mini-Syposium on Semantic Enrichment of Scientific Literature'''
 
−
**February 20, 2006 at the European Bioinformatics Institute, Hinxton, UK
 
−
**Attending: Michael Ashburner (speaker)
 
−
 
 
−
'''cBio OBD specification'''
 
−
**February 17, 2006, Berkeley, CA
 
−
** Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford by phone)
 
  
 
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''
 
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ↑]'''
−
** February 13-15, 2006, Philadelphia, PA
+
*February 13-15, 2006, Philadelphia, PA
−
**Attending: Barry Smith
+
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]
−
 
 
−
'''Fourth Semantic Interoperability for E-Government Conference'''
 
−
** February 9-10, 2006, MITRE, McLean, VA
 
−
** [http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910 ↑] http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910]
 
−
**Attending: Barry Smith
 
−
 
 
−
'''NIAID BRC3 and Inter Operability Working Group meeting'''
 
−
** February 6-7, 2006,  Philadelphia, PA
 
−
** [http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm ↑]
 
−
** Attending: Suzanna Lewis, Barry Smith
 
−
 
 
−
'''PharmGKB and cBiO meeting'''
 
−
** January 31, 2006, Stanford, CA
 
−
** Attending: Daniel Rubin (Stanford); Suzanna Lewis, Sima Misra (Berkeley); Russ Altman, Tina Boussard, Teri Klein, Mark Woon (PharmGKB)
 
−
 
 
−
'''Pacific Symposium on Biocomputing, 2006'''
 
−
**January 2-6, 2006, Maui, HI
 
−
**Michael Ashburner (Keynote)
 
−
**[http://psb.stanford.edu/ http://psb.stanford.edu/ ↑]]
 
−
 
 
−
'''NCBC Meeting'''
 
−
**Dec. 15-16, NIH, Bethesda, MD
 
−
**Attending: Mark Musen, Suzanna Lewis, Monte Westerfield
 
−
**Introducting new NCBCs to each other and NIH staff
 
−
 
 
−
'''Phenotype Annotation Meeting'''  ↑]
 
−
**December 11-12, 2005, [http://www.visitasilomar.com/  Asilomar conference center]
 
−
** Attending: Melissa Haendel, Paula Mabee, Erik Segerdell, Monte Westerfield (ZFIN); Gillian Millburn (FlyBase); Mark Gibson, Suzanna Lewis, Chris Mungall (Berkeley); Chris Callendar, Sean Falconer, Margaret-Anne Storey (UVic)
 
−
** Define requirements of phenotype annotation tools
 
−
 
 
−
'''International Biocurator Meeting''' ↑]
 
−
**December 8-11, 2005, Asilomar, CA
 
−
**[http://biocurator.org/intnlbiocurator.html http://biocurator.org/intnlbiocurator.html]
 
−
**Attending: Sima Misra (organizer), Chris Mungall (speaker), Monte Westerfield (speaker)
 
−
 
 
−
'''National Bioinformatics Network, South Africa''' ↑]
 
−
**December 2, 2005, University of Cape Town, SA
 
−
**Michael Ashburner (Keynote)
 
−
 
−
'''Phenotype Ontology Content Workshop''' ↑]
 
−
**Nov. 19-20, 2005, Cold Spring Harbor, NY
 
−
** Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
 
−
** [[Media:PhenoAgenda.doc]]
 
−
 
 
−
'''Stanford/Mayo/Berkeley Meetings''' ↑]
 
−
**Nov. 21, 10am-3pm, Stanford, CA; Nov. 22, 10am-3pm, Berkeley, CA
 
−
** Attending: Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam,  (Stanford); Nomi Harris, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); James Buntrock, Deepak Sharma, Harold Solbrig (Mayo by phone)
 
  
−
'''Forbes Dewey Meeting'''
+
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ↑]
−
**Late October, MIT, Cambridge, MA
+
*December 8-11, 2005, Asilomar, CA
−
**Michael Ashburner, chair
+
*Attending: Sima Misra, Chris Mungall, Monte Westerfield
−
**Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
 
  
−
'''Genome Informatics Meeting''' ↑]
+
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ↑]  
−
**Oct. 28-Nov. 1, 2005, Cold Spring Harbor, NY
+
*Nov. 19-20, 2005, Cold Spring Harbor, NY
−
**Suzanna Lewis (organizer, speaker)
+
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
  
−
'''Workshop on Bio-Ontologies'''
+
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''
−
**October 28, 2005, Buffalo, NY
+
*October 28, 2005, Buffalo, NY
−
**[http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]
+
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider
−
**Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
 
−
**Training session: making ontologies better
 
−
***'''NCBO'''
 
  
−
'''1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology'''
+
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ↑]'''  
−
**October, 2005, Caxambu, Brazil ↑]
+
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)
−
**Michael Ashburner (Keynote)
+
*October 28, 2005, Buffalo, NY
 +
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]

Latest revision as of 12:59, 19 October 2018

NCBO-Sponsored Dissemination and Training Events 2005-2015

International Conference on Biomedical Ontology, Lisbon, July 27-30, 2015

The Role of Ontology in Big Cancer Data, National Cancer Institute, Bethesda, MD, May 12-13, 2015

Information Artifact Ontologies, Workshop organized as part of FOIS, Rio de Janeiro, Brazil, September 22, 2014

5th International Conference on Biomedical Ontologies (ICBO 2014), Houston, TX, October 6-9, 2014

Protein Ontology Workshop

  • Georgetown, DC, June 18-19, 2014

Tutorial on Ontology for Image Informatics

  • Buffalo, NY, June 23, 2014

Ontology and Imaging Informatics: Third Clinical and Translational Science Ontology Workshop

  • Buffalo, NY, June 24-25, 2014.

NCBO Hackathon 2013

PRO-PO-GO Meeting: Challenges of Ontology Coordination Across Organisms

  • Buffalo, NY, May 15-16, 2013
  • The goal of this meeting is to enhance ontology coordination in relation to plant genomics, proteomics and related fields. A special focus will be the ontological treatment of diseases and phenotypes in relation to all organisms.

Second CTSA Ontology Workshop

  • Orlando, FL, February 11-12, 2013
  • This is the second meeting of the new IKFC Clinical and Translational Science Ontology Affinity Group which has been established to leverage the use of common ontologies to support different aspects of information-driven clinical and translational research. The focus of the meeting is to explore new and existing uses of common ontologies to support sharing and discovery of data and resources, researcher networking, and particularly to support the evaluation of research.

SWAT4LS2012 Tutorial

  • Paris, November 29, 2012

Clinical Classifications and Biomedical Ontologies: Terminology Evolution, Principles, and Practicalities

  • AMIA 2012 Annual Symposium, November 3, 2012 Chicago, IL. Presented by Christopher Chute, James Cimino, and Mark Musen.

Overview Presentation for the NCBC Showcase

  • November 8-9, 2012

Course on Anatomy Ontologies

Bio-Ontologies 2012 Long Beach, CA July 13-14, 2012

  • NCBO Web services: Powering Semantically Aware Applications

International Conference on Biomedical Ontology, Graz, Austria, July 21-25, 2012.

Semantics of Biodiversity

Immunology Ontologies and Their Applications in Processing Clinical Data

  • Buffalo, NY, June 11-13, 2012.

CTSA Ontology Tutorial

  • Baltimore, MD, April 24, 2012.

Clinical and Translational Science Ontology Workshop

  • Baltimore, MD, April 25-26, 2012.

Introduction to Bio-Ontologies and Their Applications

  • Stanford University, CA, March 15, 2012.

AMIA CRI Demo

  • San Francisco, CA, March 22, 2012.

NCBO Hackathon

  • Stanford University, CA, March 26-27, 2012.

Introduction to Bio-Ontologies

  • New York Botanical Gardens, Bronx, NY, February 5, 2012.

SWAT4LS Tutorial: NCBO Web Services and Development of Semantic Applications

  • London, UK, December 7-9, 2011

DBCLS Hackathon

  • Kyoto, Japan, August 22-26, 2011

2nd International Conference on Biomedical Ontology ICBO ↑

  • Videos of all presentations and discussions are available here
  • Buffalo, NY. Workshops and tutorials: July 26-27, 2011. Conference: July 28-30, 2011.

How to Build a Biomedical Ontology ↑

The Importance of Biomedical Ontology for Dental Research, General Session of the International Association for Dental Research ↑

  • San Diego, CA, March 16-19, 2011.

Infectious Disease Ontology Dissemination Workshop ↑

  • Baltimore, MD, December 8-9, 2010.

Introduction to Ontology Building ↑

  • Tutorial, University at Buffalo, October 23, 2010.

Medinfo Workshop on Infectious Disease Ontology↑

  • September 9-15, 2010, Cape Town, South Africa,

W3C Workshop – RDF Next Steps↑

  • June 26-27, 2010, Stanford, CA.

Formal Ontology in Information Systems ↑

  • Toronto, Canada, May 11-14, 2010.

Ontology Summit 2010: Creating the Ontologists of the Future ↑

  • March 15-16, 2010, NIST, Gaithersburg, MD
  • Co-sponsored by the National Center for Ontological Research, the National Institute of Standards and Technology, the Ontolog Forum, and the International Association for Ontology and Its Applications
  • Communique

3rd Interdisciplinary Ontology Conference ↑

  • February 26-28, 2010, Keio University, Tokyo, Japan
  • Conference co-sponsored with the Japanese Center for Ontological Research
  • Barry Smith, Riichiro Mizoguchi and Sumio Nakagawa (eds.), Interdisciplinary Ontology. Proceedings of the Third Interdisciplinary Ontology Meeting (Tokyo, Japan, February 27-28, 2010), Tokyo: Keio University Press, 2010.

Ontologies for the Virtual Physiological Human ↑

  • February 14, 2010, European Bioinformatics Institute, Hinxton, Cambridge, UK

The Future of the Foundational Model of Anatomy

From Aristotle to the Universal Core: Ontology Training Event ↑

  • October 10-11, 2009, Buffalo, NY
  • Co-sponsored with the University at Buffalo
  • Webcast

Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes ↑

  • September 3-4, 2009, University of Milan, Biccaca, Italy
  • NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
  • Follow-up from 2008 NCBO Clinical Phenotypes meeting

International Conference on Biomedical Ontology (ICBO) ↑

  • July 27-29, 2009, Buffalo, NY
  • Co-sponsored by the National Center for Ontological Research and the University at Buffalo
  • Proceedings

From Basic Formal Ontology to the Information Artifact Ontology ↑

  • July 25-26, 2009, Buffalo, NY
  • NCBO Tutorial co-located with the International Conference on Biomedical Ontology (ICBO); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
  • Webcast

International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy ↑

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
  • Co-organized with the Japanese Center for Ontological Research

Evolutionary Biology and Ontologies ↑

  • January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology (SICB)
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes ↑

How to Make Useful Ontologies for Biomedicine ↑

  • July 19, 2008, Toronto, Canada.
  • NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
  • Slides

Evolutionary Biology and Ontologies ↑

  • June 20, 2008, Minneapolis, MN
  • Held in conjunction with the Evolution 2008 meeting.
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

The Ontology of Relations ↑

  • May 19-20, 2008, Denver, CO
  • NCBO Dissemination Workshop

Introduction to Biomedical Ontologies ↑

  • April 12-13, 2008, Buffalo, NY
  • NCBO Tutorial (Faculty: Barry Smith)
  • Webcast

Ontologies of Cellular Networks ↑

  • March 27-28, 2008, Newark, NJ
  • NCBO Dissemination Workshop
  • Publication

Joint JCOR-NCBO International Biomedical Ontology Workshop ↑

  • February 26-27, 2008, Tokyo, Japan, organized in conjunction with InterOntologies 08
  • NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research

Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences ↑

  • July 23-27, 2007: Schloss Dagstuhl, Germany
  • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
  • Proceedings

Ontologies for Biomedicine – How to Make and Use Them ↑

  • July 21, 2007, Vienna, Austria
  • NCBO Tutorial at ISMB 2007 (Faculty: Nigam Shah and Barry Smith)

Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research ↑

Sequence Ontology Immunology Workshop: Focusing on Gene, Allele, HLA, and More ↑

  • June 12-13th, 2007, University of Utah, Salt Lake City, UT

Clinical Trial Ontology ↑

  • May 16-17 2007, NIH Campus, Bethesda, MD
  • NCBO Dissemination Workshop
  • OCRe Ontology

Dagstuhl Seminar: Ontology Interoperability in Biomedicine ↑

  • March 27-30, 2007, Dagstuhl, Germany
  • NCBO Dissemination Workshop
  • Seminar Report

The OBO Foundry - A Gold Standard Approach to Ontology Evaluation ↑

Phenotype Ontology ↑ Announcement

  • December 1-2, 2006, Clark Center, Stanford, CA
  • NCBO Dissemination Workshop

Connecting BioPAX to Other Biomedical Ontologies

  • November 20-21, 2006, MIT, Boston, MA
  • NCBO Tutorial (Faculty: Barry Smith)

Panel on the Future of HL7 ↑

Genomics Knowledge Representation for Clinical Trials ↑

  • AMIA Annual Symposium, November 12, 2006, Washington DC
  • Tutorial (Faculty: Nigam Shah, Barry Smith, and others)

Biomedical Imaging Ontologies ↑

  • AMIA Annual Symposium, November 11, 2006, Washington DC,
  • Follow-Up Meeting to NCBO Dissemination Workshop on the Ontology of Images

Biomedical Ontology in Action ↑

  • November 8, 2006, Baltimore, MD
  • Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
  • Publication

Ontology of Diseases ↑

  • November 6-7, 2006, John Hopkins University, Baltimore
  • NCBO Dissemination Workshop organized in association with the FOIS 2006 (Formal Ontology and Information Systems) Conference

Ontology Development ↑

  • September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)

Anatomy Ontology Workshop ↑

Tutorial on Standards and Ontologies ↑

Ontologies for Biomedicine – How to Make and Use Them ↑

On the Need and Utility of Ontologies ↑"

  • Jul 30-August 4, 2006, Fortaleza, Brazil.
  • Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.

Functional Genomics Investigation Ontology (FuGO) 2nd Workshop ↑.

  • July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
  • This meeting led to creation of OBI Ontology for Biomedical Investigations;

Ontology Visualization with Jambalaya ↑

  • July 23-26, 2006, Stanford, CA
  • NCBO Tutorial (Faculty: Chris Callendar)

Scientific Ontologies: NCBC Special Interest Group Meeting ↑

  • July 17-19, 2006, NIH, Bethesda, MD
  • i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [1]

Ontology: A Vision for the Future and Its Realization ↑

Training Course in Biomedical Ontologies ↑

Phenotype Annotation Meeting ↑

  • May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
  • NCBO Dissemination Workshop

Principles of Biomedical Ontology Design ↑

The Ontology of Images ↑

  • March 24-25, 2006, Stanford, CA
  • NCBO Dissemination Workshop
  • Led to establishment of standards for BIRNLex Ontology
  • Webcast

Ontology Workshop: Focus on Immunology ↑

  • March 21-22, 2006, Gaitherburg, MD
  • Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
  • Publication; Ontology

Navigating the Translational Researcher Through a Complex of Animal and Biological Resources ↑

  • March 6-7, 2006, Bethesda, MD
  • Presentation by Monte Westerfield on Animal Models and Ontologies

BIRN ontology workshop Agenda

  • February 28-March 1, 2006, Stanford, CA
  • Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" Part 1 Part 2
  • NCBO Dissemination Workshop
  • Led to creation of BIRNLex ontology

Functional Genomics Investigation Ontology (FuGO): First Workshop ↑

International Biocurator Meeting ↑

  • December 8-11, 2005, Asilomar, CA
  • Attending: Sima Misra, Chris Mungall, Monte Westerfield

Phenotype Ontology Content Workshop ↑

  • Nov. 19-20, 2005, Cold Spring Harbor, NY
  • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield

Workshop on Bio-Ontologies ↑

  • October 28, 2005, Buffalo, NY
  • Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider

Making Ontologies Better ↑

  • NCBO Training Workshop (Faculty: David Hill and Barry Smith)
  • October 28, 2005, Buffalo, NY
  • Slides
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