Difference between revisions of "Meetings and Events"
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'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] | '''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ↑] | ||
*December 21, 2006 | *December 21, 2006 | ||
| − | *Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides] [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio] | + | *Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication] |
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Poster] | '''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ↑]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Poster] | ||
*December 1-2, 2006, Clark Center, Stanford, CA | *December 1-2, 2006, Clark Center, Stanford, CA | ||
*NCBO Dissemination Workshop | *NCBO Dissemination Workshop | ||
| − | |||
'''Connecting BioPAX to Other Biomedical Ontologies [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ↑]''' | '''Connecting BioPAX to Other Biomedical Ontologies [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ↑]''' | ||
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'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]''' | '''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ↑]''' | ||
*November 11, 2006, AMIA Annual Symposium, Washington DC | *November 11, 2006, AMIA Annual Symposium, Washington DC | ||
| − | *NCBO Dissemination Workshop | + | *Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images] |
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]''' | '''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ↑]''' | ||
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'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]''' | '''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ↑]''' | ||
*November 6-7, 2006, John Hopkins University, Baltimore | *November 6-7, 2006, John Hopkins University, Baltimore | ||
| − | *NCBO Dissemination Workshop organized in association with the | + | *NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference |
'''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ↑]''' | '''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ↑]''' | ||
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*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS) | *Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS) | ||
| − | '''Anatomy Ontology Workshop http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]''' | + | '''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ↑]''' |
*September 8-9, 2006, University of Washington, Seattle, WA | *September 8-9, 2006, University of Washington, Seattle, WA | ||
*NCBO Dissemination Workshop | *NCBO Dissemination Workshop | ||
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*August 27, 2006, Maastricht, Netherlands. | *August 27, 2006, Maastricht, Netherlands. | ||
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) | *NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters) | ||
| + | *[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication] | ||
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]''' | '''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ↑]''' | ||
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'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]" | '''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ↑]" | ||
*Jul 30-August 4, 2006, Fortaleza, Brazil. | *Jul 30-August 4, 2006, Fortaleza, Brazil. | ||
| − | * Presentation by Michael Ashburner at the Conference In Silico Analysis of Proteins | + | * Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot. |
| − | '''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. | + | '''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ↑]'''. |
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK | *July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK | ||
| − | *This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations | + | *This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations; [http://internap.dl.sourceforge.net/sourceforge/obi/REPORT-2nd-FuGO-Workshop-July06-EBI.doc Report] |
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]''' | '''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ↑]''' | ||
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*NCBO Tutorial (Faculty: Chris Callendar) | *NCBO Tutorial (Faculty: Chris Callendar) | ||
| − | '''Scientific Ontologies [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]''' | + | '''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ↑]''' |
*July 17-19, 2006, NIH, Bethesda, MD | *July 17-19, 2006, NIH, Bethesda, MD | ||
| − | *i2b2, NAMIC and NCBO sponsored | + | *i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/] |
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]''' | '''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ↑]''' | ||
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'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]''' | '''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ↑]''' | ||
*March 31-April 3, 2006, St. Croix | *March 31-April 3, 2006, St. Croix | ||
| − | *NCBO Tutorial by Barry Smith at the [ | + | *NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting] |
| + | *[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication] | ||
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]''' | '''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ↑]''' | ||
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*NCBO Dissemination Workshop | *NCBO Dissemination Workshop | ||
*Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology | *Led to establishment of standards for [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] Ontology | ||
| + | *[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast] | ||
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]''' | '''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ↑]''' | ||
*March 21-22, 2006, Gaitherburg, MD | *March 21-22, 2006, Gaitherburg, MD | ||
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting | *Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting | ||
| + | *[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology] | ||
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]''' | '''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ↑]''' | ||
Revision as of 14:45, 26 December 2009
NCBO-Sponsored Dissemination and Training Events 2005-2009
The Future of the Foundational Model of Anatomy ↑
- November 11-12, 2009, Stanford, CA
- NCBO Dissemination Workshop
- Discussion Forum
From Aristotle to the Universal Core: Ontology Training Event ↑
- October 10-11, 2009, Buffalo, NY
- Co-sponsored with the University at Buffalo
- Webcast
Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes ↑
- September 3-4, 2009, University of Milan, Biccaca, Italy
- NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
- Follow-up from 2008 NCBO Clinical Phenotypes meeting
International Conference on Biomedical Ontology (ICBO) ↑
- July 27-29, 2009, Buffalo, NY
- Co-sponsored by the National Center for Ontological Research and the University at Buffalo
- Proceedings
From Basic Formal Ontology to the Information Artifact Ontology ↑
- July 25-26, 2009, Buffalo, NY
- NCBO Tutorial co-located with the International Conference on Biomedical Ontology (ICBO); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
- Webcast
International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy ↑
- Mar 30-Apr 1, 2009, Miami, FL
- Co-sponsored by the International Association for Dental Research
- Slides; Handout: "What is an Ontology and Why is it Important?"
Joint JCOR-NCBO International Biomedical Ontology Workshop ↑
- Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
- Co-organized with the Japanese Center for Ontological Research
Evolutionary Biology and Ontologies ↑
- January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology (SICB)
- Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
- Report
Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes ↑
- September 3-4, 2008, Dallas, TX
- NCBO Dissemination Workshop
- Publication; Ontology; Follow-Up Meeting
How to Make Useful Ontologies for Biomedicine ↑
- July 19, 2008, Toronto, Canada.
- NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
- Slides
Evolutionary Biology and Ontologies ↑
- June 20, 2008, Minneapolis, MN
- Held in conjunction with the Evolution 2008 meeting.
- Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
- Report
The Ontology of Relations ↑
- May 19-20, 2008, Denver, CO
- NCBO Dissemination Workshop
Introduction to Biomedical Ontologies ↑
- April 12-13, 2008, Buffalo, NY
- NCBO Tutorial (Faculty: Barry Smith)
- Webcast
Ontologies of Cellular Networks ↑
- March 27-28, 2008, Newark, NJ
- NCBO Dissemination Workshop
- Publication
Joint JCOR-NCBO International Biomedical Ontology Workshop ↑
- February 26-27, 2008, Tokyo, Japan, organized in conjunction with InterOntologies 08
- NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research
Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences ↑
- July 23-27, 2007: Schloss Dagstuhl, Germany
- Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
- Proceedings
Ontologies for Biomedicine – How to Make and Use Them ↑
- July 21, 2007, Vienna, Austria
- NCBO Tutorial at ISMB 2007 (Faculty: Nigam Shah and Barry Smith)
Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research ↑
- June 20-23, 2007, Schloss Dagstuhl, Germany
- NCBO Training Workshop, organized in conjunction with the Institute for Formal Ontology and Medical Information Science, Saarbrücken, German
Clinical Trial Ontology ↑
- May 16-17 2007, NIH Campus, Bethesda, MD
- NCBO Dissemination Workshop
- OCRe Ontology
Dagstuhl Seminar: Ontology Interoperability in Biomedicine ↑
- March 27-30, 2007, Dagstuhl, Germany
- NCBO Dissemination Workshop
- Seminar Report
The OBO Foundry - A Gold Standard Approach to Ontology Evaluation ↑
- December 21, 2006
- Ontolog Forum Talk by Barry Smith: Slides;Audio; Publication
- December 1-2, 2006, Clark Center, Stanford, CA
- NCBO Dissemination Workshop
Connecting BioPAX to Other Biomedical Ontologies ↑
- November 20-21, 2006, MIT, Boston, MA
- NCBO Tutorial (Faculty: Barry Smith)
Panel on the Future of HL7 ↑
- AMIA Anual Symposium, November 14, 2006, Washington DC
- Audio; Smith Slides; Ceusters Slides
Genomics Knowledge Representation for Clinical Trials ↑
- AMIA Annual Symposium, November 12, 2006, Washington DC
- Tutorial (Faculty: Nigam Shah, Barry Smith, and others)
Biomedical Imaging Ontologies ↑
- November 11, 2006, AMIA Annual Symposium, Washington DC
- Follow-Up Meeting to NCBO Dissemination Workshop on the Ontology of Images
Biomedical Ontology in Action ↑
- November 8, 2006, Baltimore, MD
- Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
- Publication
Ontology of Diseases ↑
- November 6-7, 2006, John Hopkins University, Baltimore
- NCBO Dissemination Workshop organized in association with the FOIS 2006 (Formal Ontology and Information Systems) Conference
The Philosophy of Biology ↑
- October 14-15, 2006, Buffalo, NY
- NCBO Dissemination Workshop
Ontology Development ↑
- September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
- Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
Anatomy Ontology Workshop ↑
- September 8-9, 2006, University of Washington, Seattle, WA
- NCBO Dissemination Workshop
- Publication1; Publication2; Ontology
Tutorial on Standards and Ontologies ↑
- August 27, 2006, Maastricht, Netherlands.
- NCBO Tutorial, organized in conjunction with the Medical Informatics Europe 2006 Conference (Faculty: Barry Smith and Werner Ceusters)
- Publication
Ontologies for Biomedicine – How to Make and Use Them ↑
- August 14-18, 2006. Stanford University
- Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)
On the Need and Utility of Ontologies ↑"
- Jul 30-August 4, 2006, Fortaleza, Brazil.
- Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.
Functional Genomics Investigation Ontology (FuGO) 2nd Workshop ↑.
- July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
- This meeting led to creation of OBI Ontology for Biomedical Investigations; Report
Ontology Visualization with Jambalaya ↑
- July 23-26, 2006, Stanford, CA
- NCBO Tutorial (Faculty: Chris Callendar)
Scientific Ontologies: NCBC Special Interest Group Meeting ↑
- July 17-19, 2006, NIH, Bethesda, MD
- i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [1]
Ontology: A Vision for the Future and Its Realization ↑
- July 19, 2006, NIH, Bethesda, MD
- Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [2]
- Musen Slides; Smith Slides
Training Course in Biomedical Ontologies ↑
- May 21-24, 2006, Schloss Dagstuhl, Germany
- NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the Institute for Formal Ontology and Medical Information Science, Saarbrücken, German
Phenotype Annotation Meeting ↑
- May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
- NCBO Dissemination Workshop
Principles of Biomedical Ontology Design ↑
- March 31-April 3, 2006, St. Croix
- NCBO Tutorial by Barry Smith at the Gene Ontology Consortium Meeting
- Publication
The Ontology of Images ↑
- March 24-25, 2006, Stanford, CA
- NCBO Dissemination Workshop
- Led to establishment of standards for BIRNLex Ontology
- Webcast
Ontology Workshop: Focus on Immunology ↑
- March 21-22, 2006, Gaitherburg, MD
- Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
- Publication; Ontology
Navigating the Translational Researcher Through a Complex of Animal and Biological Resources ↑
- March 6-7, 2006, Bethesda, MD
- Presentation by Monte Westerfield on Animal Models and Ontologies
BIRN ontology workshop
- February 28-March 1, 2006, Stanford, CA
- Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" Part 1 Part 2
- NCBO Dissemination Workshop
- Let to creation of BIRNLex ontology
Functional Genomics Investigation Ontology (FuGO): First Workshop ↑
- February 13-15, 2006, Philadelphia, PA
- Publication
International Biocurator Meeting ↑
- December 8-11, 2005, Asilomar, CA
- Attending: Sima Misra, Chris Mungall, Monte Westerfield
Phenotype Ontology Content Workshop ↑
- Nov. 19-20, 2005, Cold Spring Harbor, NY
- Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield
Workshop on Bio-Ontologies ↑
- October 28, 2005, Buffalo, NY
- Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider
Making Ontologies Better ↑
- NCBO Training Workshop (Faculty: David Hill and Barry Smith)
- October 28, 2005, Buffalo, NY
- Slides