Difference between revisions of "Meetings and Events"

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== NCBO-Sponsored Dissemination and Training Events 2005-2009 ==
 
== NCBO-Sponsored Dissemination and Training Events 2005-2009 ==
  
'''The Future of the Foundational Model of Anatomy [http://groups.google.com/group/fma-owl-2009/web/agenda?hl=en ?]'''  
+
'''The Future of the Foundational Model of Anatomy [http://groups.google.com/group/fma-owl-2009/web/agenda?hl=en ]'''  
 
*November 11-12, 2009, Stanford, CA
 
*November 11-12, 2009, Stanford, CA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]
 
*[http://groups.google.com/group/fma-owl-2009/topics?hl=en Discussion Forum]
  
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ?]'''
+
'''From Aristotle to the Universal Core: Ontology Training Event [http://ncorwiki.buffalo.edu/index.php/Ontology_Class_2009 ]'''
 
*October 10-11, 2009, Buffalo, NY
 
*October 10-11, 2009, Buffalo, NY
 
*Co-sponsored with the University at Buffalo
 
*Co-sponsored with the University at Buffalo
 
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]
 
*[http://ontology.buffalo.edu/smith/IntroOntology_Course.html Webcast]
  
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ?]'''
+
'''Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes [http://bimib.disco.unimib.it/index.php/SSFW09 ]'''
 
*September 3-4, 2009, University of Milan, Biccaca, Italy
 
*September 3-4, 2009, University of Milan, Biccaca, Italy
 
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
 
*NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
 
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]
 
*Follow-up from [http://www.bioontology.org/wiki/index.php/DallasWorkshop 2008 NCBO Clinical Phenotypes meeting]
  
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu ?]'''
+
'''International Conference on Biomedical Ontology (ICBO) [http://icbo.buffalo.edu ]'''
 
*July 27-29, 2009, Buffalo, NY  
 
*July 27-29, 2009, Buffalo, NY  
 
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 
*Co-sponsored by the National Center for Ontological Research and the University at Buffalo
 
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]
 
*[http://icbo.buffalo.edu/Proceedings.pdf Proceedings]
  
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ?]'''
+
'''From Basic Formal Ontology to the Information Artifact Ontology [http://www.bioontology.org/wiki/index.php/From_BFO_to_IAO ]'''
 
*July 25-26, 2009, Buffalo, NY  
 
*July 25-26, 2009, Buffalo, NY  
 
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
 
*NCBO Tutorial co-located with the International Conference on Biomedical Ontology ([http://icbo.buffalo.edu ICBO]); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
 
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]
 
*[http://org.buffalo.edu/Presentations.html#ICBOvideos Webcast]
  
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ?]'''  
+
'''International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy [http://ontology.buffalo.edu/ncbo/pain.pdf ]'''  
 
*Mar 30-Apr 1, 2009, Miami, FL
 
*Mar 30-Apr 1, 2009, Miami, FL
 
*Co-sponsored by the International Association for Dental Research
 
*Co-sponsored by the International Association for Dental Research
 
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"]  
 
*[http://ontology.buffalo.edu/smith/ppt/Ontology/What_Is_Ontology_Miami_Mar09.ppt Slides]; [http://ontology.buffalo.edu/bio/What_is_an_ontology.htm Handout: "What is an Ontology and Why is it Important?"]  
  
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ?]'''  
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://abelard.flet.keio.ac.jp/InterOntology09 ]'''  
 
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
 
*Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
 
*Co-organized with the Japanese Center for Ontological Research  
 
*Co-organized with the Japanese Center for Ontological Research  
  
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ?]'''  
+
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies_2009 ]'''  
 
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])
 
*January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology ([http://www.sicb.org/meetings/2009/index.php3 SICB])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 
*Co-sponsored by the National Evolutionary Synthesis Center ([http://www.nescent.org NESCent])
 
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]
 
*[http://blog.phenoscape.org/2009/01/09/second-evolutionary-biology-ontologies-workshop/ Report]
  
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ?]'''
+
'''Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes [http://www.bioontology.org/wiki/index.php/DallasWorkshop ]'''
 
*September 3-4, 2008, Dallas, TX
 
*September 3-4, 2008, Dallas, TX
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]
 
*[http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Publication]; [http://code.google.com/p/ogms/ Ontology]; [http://bimib.disco.unimib.it/index.php/SSFW09 Follow-Up Meeting]
  
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ?]'''
+
'''How to Make Useful Ontologies for Biomedicine [http://www.bioontology.org/wiki/index.php/How_to_Make_Useful_Ontologies_for_Biomedicine ]'''
 
*July 19, 2008, Toronto, Canada.
 
*July 19, 2008, Toronto, Canada.
 
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
 
*NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
 
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]
 
*[http://ontology.buffalo.edu/smith/ppt/ISMB/Tutorial2005.ppt Slides]
  
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ?]'''
+
'''Evolutionary Biology and Ontologies [http://www.bioontology.org/wiki/index.php/Evolutionary_Biology_and_Ontologies ]'''
 
*June 20, 2008, Minneapolis, MN
 
*June 20, 2008, Minneapolis, MN
 
*Held in conjunction with the [http://www.cce.umn.edu/conferences/evolution/ Evolution 2008] meeting.
 
*Held in conjunction with the [http://www.cce.umn.edu/conferences/evolution/ Evolution 2008] meeting.
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*[http://kaboodle.nescent.org/?q=node/58 Report]
 
*[http://kaboodle.nescent.org/?q=node/58 Report]
  
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ?]'''
+
'''The Ontology of Relations [http://www.bioontology.org/wiki/index.php/OntologyRelations ]'''
 
*May 19-20, 2008, Denver, CO
 
*May 19-20, 2008, Denver, CO
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
  
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ?]'''
+
'''Introduction to Biomedical Ontologies [http://www.bioontology.org/wiki/index.php/Introduction_to_Biomedical_Ontologies ]'''
 
*April 12-13, 2008, Buffalo, NY
 
*April 12-13, 2008, Buffalo, NY
 
*NCBO Tutorial (Faculty: Barry Smith)
 
*NCBO Tutorial (Faculty: Barry Smith)
 
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]
 
*[http://ontology.buffalo.edu/smith/BioOntology_Course.html Webcast]
  
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ?]'''  
+
'''Ontologies of Cellular Networks [http://www.bioontology.org/wiki/index.php/Networks ]'''  
 
*March 27-28, 2008, Newark, NJ
 
*March 27-28, 2008, Newark, NJ
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]
 
*[http://stke.sciencemag.org/cgi/content/full/sigtrans;1/50/mr2?ijkey=CFo.aAta0Qfzs&keytype=ref&siteid=sigtrans Publication]
  
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ?]'''
+
'''Joint JCOR-NCBO International Biomedical Ontology Workshop [http://www.bioontology.org/wiki/index.php/JCOR ]'''
 
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]
 
*February 26-27, 2008, Tokyo, Japan, organized in conjunction with [http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08 InterOntologies 08]
 
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research
 
*NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research
  
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ?]'''
+
'''Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences [http://www.dagstuhl.de/07301 ]'''
 
*July 23-27, 2007: Schloss Dagstuhl, Germany
 
*July 23-27, 2007: Schloss Dagstuhl, Germany
 
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 
*Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
 
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]
 
*[http://drops.dagstuhl.de/portals/index.php?semnr=08131 Proceedings]
  
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ?]'''
+
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.bioontology.org/wiki/index.php/Ontologies_for_Biomedicine_%E2%80%93_How_to_make_and_use_them ]'''
 
*July 21, 2007, Vienna, Austria
 
*July 21, 2007, Vienna, Austria
 
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)
 
*NCBO Tutorial at [http://www.iscb.org/cms_addon/conferences/ismbeccb2007/ ISMB 2007] (Faculty: Nigam Shah and Barry Smith)
  
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ?]'''
+
'''Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research [http://www.ifomis.uni-saarland.de/Events/OntospringIII.html ]'''
 
*June 20-23, 2007, Schloss Dagstuhl, Germany  
 
*June 20-23, 2007, Schloss Dagstuhl, Germany  
 
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
 
*NCBO Training Workshop, organized in conjunction with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
  
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ?]'''
+
'''Clinical Trial Ontology [http://www.bioontology.org/wiki/index.php/Workshop_on_Clinical_Trial_Ontology ]'''
 
*May 16-17 2007, NIH Campus, Bethesda, MD
 
*May 16-17 2007, NIH Campus, Bethesda, MD
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 
*[http://rctbank.ucsf.edu/home/ocre.html OCRe Ontology]
 
*[http://rctbank.ucsf.edu/home/ocre.html OCRe Ontology]
  
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ?]'''
+
'''Dagstuhl Seminar: Ontology Interoperability in Biomedicine [http://www.dagstuhl.de/de/programm/kalender/semhp/?semid=29453 ]'''
 
*March 27-30, 2007, Dagstuhl, Germany
 
*March 27-30, 2007, Dagstuhl, Germany
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report]  
 
*[http://drops.dagstuhl.de/opus/volltexte/2008/1628/pdf/07132.Dagstuhl.1628.pdf Seminar Report]  
  
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ?]  
+
'''The OBO Foundry - A Gold Standard Approach to Ontology Evaluation [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRW3 ]  
 
*December 21, 2006  
 
*December 21, 2006  
 
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]
 
*Ontolog Forum Talk by Barry Smith: [http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWB Slides];[http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21#nidRWQ Audio]; [http://www.nature.com/nbt/journal/v25/n11/pdf/nbt1346.pdf Publication]
  
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ?]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Poster]
+
'''Phenotype Ontology [http://www.bioontology.org/wiki/index.php/PATO_Meeting ]''' [http://www.bioontology.org/wiki/images/c/c5/Pheno_workshop_Dec2006.pdf Poster]
 
*December 1-2, 2006, Clark Center, Stanford, CA
 
*December 1-2, 2006, Clark Center, Stanford, CA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
  
'''Connecting BioPAX to Other Biomedical Ontologies [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ?]'''  
+
'''Connecting BioPAX to Other Biomedical Ontologies [http://biopaxwiki.org/cgi-bin/moin.cgi/SmithWorkshopInformation ]'''  
 
*November 20-21, 2006, MIT, Boston, MA
 
*November 20-21, 2006, MIT, Boston, MA
 
*NCBO Tutorial (Faculty: Barry Smith)
 
*NCBO Tutorial (Faculty: Barry Smith)
  
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ?]'''
+
'''Panel on the Future of HL7 [http://ontology.buffalo.edu/HL7/panel.htm ]'''
 
*AMIA Anual Symposium, November 14, 2006, Washington DC
 
*AMIA Anual Symposium, November 14, 2006, Washington DC
 
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]
 
*[http://ontology.buffalo.edu/HL7/AMIA_06_audio Audio]; [http://ontology.buffalo.edu/hl7/AMIA_06.ppt Smith Slides]; [http://www.org.buffalo.edu/RTU/papers/HL7-AMIA2006.ppt Ceusters Slides]
  
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ?]'''
+
'''Genomics Knowledge Representation for Clinical Trials [http://ontology.buffalo.edu/06/AMIAWorkshop.htm  ]'''
 
*AMIA Annual Symposium, November 12, 2006, Washington DC
 
*AMIA Annual Symposium, November 12, 2006, Washington DC
 
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)
 
*Tutorial (Faculty: Nigam Shah, Barry Smith, and others)
  
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ?]'''
+
'''Biomedical Imaging Ontologies [http://ontology.buffalo.edu/06/Biomedical_Imaging_Ontologies.pdf ]'''
 
*AMIA Annual Symposium, November 11, 2006, Washington DC,  
 
*AMIA Annual Symposium, November 11, 2006, Washington DC,  
 
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]
 
*Follow-Up Meeting to NCBO Dissemination Workshop on the [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images Ontology of Images]
  
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ?]'''
+
'''Biomedical Ontology in Action [http://www.imbi.uni-freiburg.de/medinf/kr-med-2006/index.html ]'''
 
*November 8, 2006, Baltimore, MD
 
*November 8, 2006, Baltimore, MD
 
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 
*Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
 
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication]  
 
*[http://mor.nlm.nih.gov/pubs/pdf/2009-ao-editorial-ob.pdf Publication]  
  
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ?]'''
+
'''Ontology of Diseases [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Diseases ]'''
 
*November 6-7, 2006, John Hopkins University, Baltimore
 
*November 6-7, 2006, John Hopkins University, Baltimore
 
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference
 
*NCBO Dissemination Workshop organized in association with the [http://www.formalontology.org/fois-2006/fois-2006.htm/ FOIS 2006] (Formal Ontology and Information Systems) Conference
  
'''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ?]'''
+
'''The Philosophy of Biology [http://ontology.buffalo.edu/06/pob ]'''
 
*October 14-15, 2006, Buffalo, NY
 
*October 14-15, 2006, Buffalo, NY
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
  
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ?]'''  
+
'''Ontology Development [http://www.niees.ac.uk/events/egenomics2006/index.shtml ]'''  
 
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
 
*September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
 
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
 
*Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)
  
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ?]'''
+
'''Anatomy Ontology Workshop [http://www.bioontology.org/wiki/index.php/Anatomy_Ontology_Workshop ]'''
 
*September 8-9, 2006, University of Washington, Seattle, WA
 
*September 8-9, 2006, University of Washington, Seattle, WA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
 
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology]  
 
*[https://www.nescent.org/wg/phenoscape/images/9/91/Caroreprint.pdf Publication1]; [http://books.google.com/books?hl=en&lr=&id=ytAaZYaW-k8C&oi=fnd&pg=PA367&dq=NCBO+workshop&ots=w8OR2hqN_5&sig=0j6MSg5OqV5RnUcXrWQS4beDGgA Publication2]; [http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro Ontology]  
  
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ?]
+
'''Tutorial on Standards and Ontologies [http://ontology.buffalo.edu/06/MIE_Tutorial.htm ]
 
*August 27, 2006, Maastricht, Netherlands.
 
*August 27, 2006, Maastricht, Netherlands.
 
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters)  
 
*NCBO Tutorial, organized in conjunction with the [http://www.informatik.uni-trier.de/~ley/db/conf/mie/mie2006.html Medical Informatics Europe 2006] Conference (Faculty: Barry Smith and Werner Ceusters)  
 
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]
 
*[http://ontology.buffalo.edu/hl7/doublestandards.pdf Publication]
  
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ?]'''
+
'''Ontologies for Biomedicine – How to Make and Use Them [http://www.lifesciencessociety.org/CSB2006/tutorialabs.html#PM6 ]'''
 
*August 14-18, 2006.  Stanford University
 
*August 14-18, 2006.  Stanford University
 
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)
 
*Tutorial at [IEEE Computational Systems Bioinformatics, 2006 http://www.lifesciencessociety.org/CSB2006/index.html] Conference (Faculty: Amar Das, Nigam Shah)
  
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ?]"
+
'''On the Need and Utility of Ontologies [http://www.swissprot20.org/ ]"
 
*Jul 30-August 4, 2006, Fortaleza, Brazil.
 
*Jul 30-August 4, 2006, Fortaleza, Brazil.
 
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.
 
* Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.
  
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ?]'''.  
+
'''Functional Genomics Investigation Ontology (FuGO) 2nd Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Jul_2006/ ]'''.  
 
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
 
*July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
 
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations; [http://internap.dl.sourceforge.net/sourceforge/obi/REPORT-2nd-FuGO-Workshop-July06-EBI.doc Report]
 
*This meeting led to creation of [http://obi-ontology.org/ OBI] Ontology for Biomedical Investigations; [http://internap.dl.sourceforge.net/sourceforge/obi/REPORT-2nd-FuGO-Workshop-July06-EBI.doc Report]
  
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ?]'''
+
'''Ontology Visualization with Jambalaya [http://protege.stanford.edu/conference/2006/tutorials.html ]'''
 
*July 23-26, 2006, Stanford, CA
 
*July 23-26, 2006, Stanford, CA
 
*NCBO Tutorial (Faculty: Chris Callendar)
 
*NCBO Tutorial (Faculty: Chris Callendar)
  
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ?]'''
+
'''Scientific Ontologies: NCBC Special Interest Group Meeting [http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Scientific_Ontologies ]'''
 
*July 17-19, 2006, NIH, Bethesda, MD
 
*July 17-19, 2006, NIH, Bethesda, MD
 
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
 
*i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
  
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ?]'''
+
'''Ontology: A Vision for the Future and Its Realization [http://www.bisti.nih.gov/ahm2006/ncbo_dissemination.htm ]'''
 
*July 19, 2006, NIH, Bethesda, MD
 
*July 19, 2006, NIH, Bethesda, MD
 
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
 
*Presentation by Mark Musen and Barry Smith at NCBC All Hands Meeting [http://www.bisti.nih.gov/ahm2006/]
 
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]
 
*[http://www.bisti.nih.gov/ahm2006/Presentations/NCBO/Dissemination/Musen_AHM_Dissemination_Event.pdf Musen Slides]; [http://www.bisti.nih.gov/ahm2006/Presentations%5CNCBO%5CDissemination%5CSmith_OBOFoundry_071906.ppt Smith Slides]
 
   
 
   
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ?]'''
+
'''Training Course in Biomedical Ontologies [http://ontology.buffalo.edu/06/os2/index.html ]'''
 
*May 21-24, 2006, Schloss Dagstuhl, Germany
 
*May 21-24, 2006, Schloss Dagstuhl, Germany
 
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
 
*NCBO Training Event (Faculty: Olivier Bodenreider, Werner Ceusters, Mark Musen, Barry Smith), organized jointly with the [http://www.ifomis.org Institute for Formal Ontology and Medical Information Science], Saarbrücken, German
  
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ?]'''
+
'''Phenotype Annotation Meeting [http://www.bioontology.org/wiki/index.php/Agenda_PaTO ]'''
 
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
 
*May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
  
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ?]'''
+
'''Principles of Biomedical Ontology Design [http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/Principles_of_Ontology_Design_St_Croix_Mar05.ppt ]'''
 
*March 31-April 3, 2006, St. Croix
 
*March 31-April 3, 2006, St. Croix
 
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]
 
*NCBO Tutorial by Barry Smith at the [http://www.geneontology.org/minutes/20060331_StCroix.pdf Gene Ontology Consortium Meeting]
 
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication]  
 
*[http://www.biomedcentral.com/1471-2105/9/S5/S2 Publication]  
  
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ?]'''
+
'''The Ontology of Images [http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images ]'''
 
*March 24-25, 2006, Stanford, CA
 
*March 24-25, 2006, Stanford, CA
 
*NCBO Dissemination Workshop
 
*NCBO Dissemination Workshop
Line 192: Line 192:
 
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]
 
*[http://www.bioontology.org/wiki/index.php/Workshop_on_Ontology_of_Images#Webcast Webcast]
  
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ?]'''
+
'''Ontology Workshop: Focus on Immunology [http://www.bioontology.org/wiki/index.php/Immunology_Workshop#Ontology_Workshop:__Focus_on_Immunology ]'''
 
*March 21-22, 2006, Gaitherburg, MD
 
*March 21-22, 2006, Gaitherburg, MD
 
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
 
*Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
 
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]
 
*[http://ontology.buffalo.edu/medo/IDO-Chapter.pdf Publication]; [http://infectiousdiseaseontology.org Ontology]
  
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ?]'''
+
'''Navigating the Translational Researcher Through a Complex of Animal and Biological Resources [http://www.esi-bethesda.com/ncrrworkshops/navigating/agenda.aspx ]'''
 
*March 6-7, 2006, Bethesda, MD
 
*March 6-7, 2006, Bethesda, MD
 
*Presentation by Monte Westerfield on Animal Models and Ontologies
 
*Presentation by Monte Westerfield on Animal Models and Ontologies
Line 207: Line 207:
 
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology
 
*Led to creation of [https://xwiki.nbirn.org:8443/xwiki/bin/view/+BIRN-OTF-Public/About+BIRNLex BIRNLex] ontology
  
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ?]'''
+
'''Functional Genomics Investigation Ontology (FuGO): First Workshop [http://sourceforge.net/projects/fugo/files/Presentations/Workshop-Feb_2006/ ]'''
 
*February 13-15, 2006, Philadelphia, PA
 
*February 13-15, 2006, Philadelphia, PA
 
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]
 
*[http://www.liebertonline.com/doi/pdf/10.1089/omi.2006.10.199 Publication]
  
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ?]
+
'''International Biocurator Meeting''' [http://biocurator.org/intnlbiocurator.html ]
 
*December 8-11, 2005, Asilomar, CA
 
*December 8-11, 2005, Asilomar, CA
 
*Attending: Sima Misra, Chris Mungall, Monte Westerfield
 
*Attending: Sima Misra, Chris Mungall, Monte Westerfield
  
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ?]  
+
'''Phenotype Ontology Content Workshop''' [http://www.bioontology.org/wiki/index.php/PhenoAgenda ]  
 
*Nov. 19-20, 2005, Cold Spring Harbor, NY
 
*Nov. 19-20, 2005, Cold Spring Harbor, NY
 
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield  
 
*Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield  
  
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ?]'''  
+
'''Workshop on Bio-Ontologies [http://ontology.buffalo.edu/05/bio-ontologies.pdf ]'''  
 
*October 28, 2005, Buffalo, NY
 
*October 28, 2005, Buffalo, NY
 
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider
 
*Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider
  
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ?]'''  
+
'''Making Ontologies Better [http://ontology.buffalo.edu/05/bio-ontologies.pdf ]'''  
 
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)
 
*NCBO Training Workshop (Faculty: David Hill and Barry Smith)
 
*October 28, 2005, Buffalo, NY
 
*October 28, 2005, Buffalo, NY
 
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]
 
*[http://ontology.buffalo.edu/smith/ppt/Gene%20Ontology/GO_Principles_Smith-Hill_2005.ppt Slides]

Revision as of 08:48, 27 December 2009

NCBO-Sponsored Dissemination and Training Events 2005-2009

The Future of the Foundational Model of Anatomy

From Aristotle to the Universal Core: Ontology Training Event

  • October 10-11, 2009, Buffalo, NY
  • Co-sponsored with the University at Buffalo
  • Webcast

Signs, Symptoms and Findings: Towards an Ontology for Clinical Phenotypes

  • September 3-4, 2009, University of Milan, Biccaca, Italy
  • NCBO Dissemination Workshop, co-sponsored by the Italian National Research Council
  • Follow-up from 2008 NCBO Clinical Phenotypes meeting

International Conference on Biomedical Ontology (ICBO)

  • July 27-29, 2009, Buffalo, NY
  • Co-sponsored by the National Center for Ontological Research and the University at Buffalo
  • Proceedings

From Basic Formal Ontology to the Information Artifact Ontology

  • July 25-26, 2009, Buffalo, NY
  • NCBO Tutorial co-located with the International Conference on Biomedical Ontology (ICBO); Faculty: Werner Ceusters, Alan Ruttenberg, Barry Smith
  • Webcast

International Consensus Workshop: Convergence on an Orofacial Pain Taxonomy

Joint JCOR-NCBO International Biomedical Ontology Workshop

  • Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting
  • Co-organized with the Japanese Center for Ontological Research

Evolutionary Biology and Ontologies

  • January 5, 2009, Boston, MA as part of the Annual Meeting of the Society for Integrative and Comparative Biology (SICB)
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

Signs, Signs, Symptoms and Findings: First Steps Toward an Ontology of Clinical Phenotypes

How to Make Useful Ontologies for Biomedicine

  • July 19, 2008, Toronto, Canada.
  • NCBO Tutorial at ISMB 2008 (Faculty: Nigam Shah and Barry Smith)
  • Slides

Evolutionary Biology and Ontologies

  • June 20, 2008, Minneapolis, MN
  • Held in conjunction with the Evolution 2008 meeting.
  • Co-sponsored by the National Evolutionary Synthesis Center (NESCent)
  • Report

The Ontology of Relations

  • May 19-20, 2008, Denver, CO
  • NCBO Dissemination Workshop

Introduction to Biomedical Ontologies

  • April 12-13, 2008, Buffalo, NY
  • NCBO Tutorial (Faculty: Barry Smith)
  • Webcast

Ontologies of Cellular Networks

  • March 27-28, 2008, Newark, NJ
  • NCBO Dissemination Workshop
  • Publication

Joint JCOR-NCBO International Biomedical Ontology Workshop

  • February 26-27, 2008, Tokyo, Japan, organized in conjunction with InterOntologies 08
  • NCBO Dissemination Workshop, co-sponsored with the Japanese Center for Ontological Research

Dagstuhl Seminar: Ontologies and Text Mining for Life Sciences

  • July 23-27, 2007: Schloss Dagstuhl, Germany
  • Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann and Michael Ashburner
  • Proceedings

Ontologies for Biomedicine – How to Make and Use Them

  • July 21, 2007, Vienna, Austria
  • NCBO Tutorial at ISMB 2007 (Faculty: Nigam Shah and Barry Smith)

Reasoning with Biomedical Information: Training Course in Logic for Biomedical Research

Clinical Trial Ontology

  • May 16-17 2007, NIH Campus, Bethesda, MD
  • NCBO Dissemination Workshop
  • OCRe Ontology

Dagstuhl Seminar: Ontology Interoperability in Biomedicine

  • March 27-30, 2007, Dagstuhl, Germany
  • NCBO Dissemination Workshop
  • Seminar Report

The OBO Foundry - A Gold Standard Approach to Ontology Evaluation

Phenotype Ontology Poster

  • December 1-2, 2006, Clark Center, Stanford, CA
  • NCBO Dissemination Workshop

Connecting BioPAX to Other Biomedical Ontologies

  • November 20-21, 2006, MIT, Boston, MA
  • NCBO Tutorial (Faculty: Barry Smith)

Panel on the Future of HL7

Genomics Knowledge Representation for Clinical Trials

  • AMIA Annual Symposium, November 12, 2006, Washington DC
  • Tutorial (Faculty: Nigam Shah, Barry Smith, and others)

Biomedical Imaging Ontologies

  • AMIA Annual Symposium, November 11, 2006, Washington DC,
  • Follow-Up Meeting to NCBO Dissemination Workshop on the Ontology of Images

Biomedical Ontology in Action

  • November 8, 2006, Baltimore, MD
  • Symposium of the Working Group on Formal (Bio-)Medical Knowledge Representation of the American Medical Informatics Association (KR-MED)
  • Publication

Ontology of Diseases

  • November 6-7, 2006, John Hopkins University, Baltimore
  • NCBO Dissemination Workshop organized in association with the FOIS 2006 (Formal Ontology and Information Systems) Conference

The Philosophy of Biology

  • October 14-15, 2006, Buffalo, NY
  • NCBO Dissemination Workshop

Ontology Development

  • September 11-13, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Genomics Standards Consortium Workshop, co-sponsored with the National Institute for Environmental e-Science (NIEeS)

Anatomy Ontology Workshop

Tutorial on Standards and Ontologies

Ontologies for Biomedicine – How to Make and Use Them

On the Need and Utility of Ontologies "

  • Jul 30-August 4, 2006, Fortaleza, Brazil.
  • Presentation by Michael Ashburner at the Conference: In Silico Analysis of Proteins - Celebrating the 20th Anniversary of Swiss-Prot.

Functional Genomics Investigation Ontology (FuGO) 2nd Workshop .

  • July 24-28, 2006, European Bioinformatics Institute, Cambridge, Hinxton, UK
  • This meeting led to creation of OBI Ontology for Biomedical Investigations; Report

Ontology Visualization with Jambalaya

  • July 23-26, 2006, Stanford, CA
  • NCBO Tutorial (Faculty: Chris Callendar)

Scientific Ontologies: NCBC Special Interest Group Meeting

  • July 17-19, 2006, NIH, Bethesda, MD
  • i2b2, NAMIC and NCBO sponsored session at NCBC All Hands Meeting [1]

Ontology: A Vision for the Future and Its Realization

Training Course in Biomedical Ontologies

Phenotype Annotation Meeting

  • May 17-20, 2006, European Bioinformatics Institute, Hinxton, Cambridge, UK
  • NCBO Dissemination Workshop

Principles of Biomedical Ontology Design

The Ontology of Images

  • March 24-25, 2006, Stanford, CA
  • NCBO Dissemination Workshop
  • Led to establishment of standards for BIRNLex Ontology
  • Webcast

Ontology Workshop: Focus on Immunology

  • March 21-22, 2006, Gaitherburg, MD
  • Sponsored by NIAID/DAIT at the 2006 American Association of Immunologists (AAI) Annual Meeting
  • Publication; Ontology

Navigating the Translational Researcher Through a Complex of Animal and Biological Resources

  • March 6-7, 2006, Bethesda, MD
  • Presentation by Monte Westerfield on Animal Models and Ontologies

BIRN ontology workshop

  • February 28-March 1, 2006, Stanford, CA
  • Tutorial by Barry Smith: "Critical Review of BIRN Ontologies" Part 1 Part 2
  • NCBO Dissemination Workshop
  • Led to creation of BIRNLex ontology

Functional Genomics Investigation Ontology (FuGO): First Workshop

International Biocurator Meeting

  • December 8-11, 2005, Asilomar, CA
  • Attending: Sima Misra, Chris Mungall, Monte Westerfield

Phenotype Ontology Content Workshop

  • Nov. 19-20, 2005, Cold Spring Harbor, NY
  • Attending: Michael Ashburner, John Day-Richter, George Gkoutos, Suzanna Lewis, Chris Mungall, Mark Musen, Erik Segerdell, Nigam Shah, Monte Westerfield

Workshop on Bio-Ontologies

  • October 28, 2005, Buffalo, NY
  • Presenting: Suzanna Lewis, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider

Making Ontologies Better

  • NCBO Training Workshop (Faculty: David Hill and Barry Smith)
  • October 28, 2005, Buffalo, NY
  • Slides