Difference between revisions of "Networks"

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Darren Natale (Protein Ontology/PIR, Georgetown University)
 
Darren Natale (Protein Ontology/PIR, Georgetown University)
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Oliver Ruebenacker (Center for Cell Analysis and Modelling / University of Connecticut Health Center)
  
 
Alan Ruttenberg (BioPAX / Science Commons)
 
Alan Ruttenberg (BioPAX / Science Commons)

Revision as of 18:55, 5 December 2007

Workshop on Ontologies of Cellular Networks

Goals

The National Center for Biomedical Ontology will host a two-day workshop focused on ontologies of cellular networks.

The goals of this workshop are:

  • 1. to provide an introduction to the basic tools and methods of ontology
  • 2. to foster networking of, and enhanced coordination between, those groups already working on ontologies of cellular networks
  • 3. to identify problems which must be solved if ontology methods are to be extended to represent biological mechanisms in greater detail
  • 4. to promote further ontology development in this area with the goal of accelerating our ability to understand basic biological phenomena and to leverage experimental data

Agenda Template

Wednesday, March 27, 2008

  • 9.00am Registration and Continental Breakfast
  • 10.00am: Session 1
  • Moderator
Introductions
  • 10am Participant Self-Introductions
  • 10.15am Introduction to Ontology
  • 10.45am Coffee
  • 11.15am The OBO Foundry
  • 11.45am
  • 12.45pm Lunch
  • 2.00-5.00pm Session 2
  • Moderator:
Cellular Networks and Cellular Network Data

Thursday, March 28, 2008

  • 8.30am Continental Breakfast
  • 9.00am Session 2
  • Moderator:
Ontologies of Cellular Networks: Alternative Approaches
  • Session 3
  • 12.45pm Lunch Break
  • Session 4
Ontologies of Cellular Networks: The Next Steps
  • Moderator: Suzanna Lewis (NCBO, Berkeley)
  • 2.00-4.00pm

Participants

Participants will include:

Helen Berman (PDB / Ruttgers)

William Bug (BIRN Ontology Task Force, UC San Diego)

Werner Ceusters (Ontology Research Group, University at Buffalo)

Lindsay Cowell (Infectious Disease Ontology / Duke University)

Peter D'Eustachio (Reactome / New York University)

Gopal Gopinathrao (Reactome / Cold Spring Harbor Laboratories)

Nancy Gough (Science)

Suzanna Lewis (NCBO, Berkeley)

Avi Ma'ayan (Mount Sinai, NY)

Darren Natale (Protein Ontology/PIR, Georgetown University)

Oliver Ruebenacker (Center for Cell Analysis and Modelling / University of Connecticut Health Center)

Alan Ruttenberg (BioPAX / Science Commons)

Andrey Rzhetsky (Chicago)

Richard Scheuermann (UTexas SW Medical Center)

Stuart Sealfon (Mount Sinai, NY)

Barry Smith (ORG, Buffalo)

Cathy Wu (Protein Ontology/PIR, Georgetown University)

Venue

Hilton Hotel Newark Airport A block of rooms has been set aside for early registrants.

Links

Literature

Current progress in network research

An Evaluation of Ontology Exchange Languages for Bioinformatics