Difference between revisions of "OBD:Phenotypes"
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(New page: OBD uses generic modeling constructs. Domain specific modeling is left to ontologies. OBD has no information model for representing genotype-phenotype associations. Phenotype description...) |
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OBD uses generic modeling constructs. Domain specific modeling is left to ontologies. OBD has no information model for representing genotype-phenotype associations. | OBD uses generic modeling constructs. Domain specific modeling is left to ontologies. OBD has no information model for representing genotype-phenotype associations. | ||
| − | Phenotype descriptions in OBD can be [PATO:Pre_vs_Post_Coordinating|pre-coordinated or post-coordinated]. Post-coordinated descriptions make use of what is sometimes called the EQ model. See the [PATO:About] page for more details on this methodology. | + | Phenotype descriptions in OBD can be [[PATO:Pre_vs_Post_Coordinating|pre-coordinated or post-coordinated]]. Post-coordinated descriptions make use of what is sometimes called the EQ model. See the [[PATO:About]] page for more details on this methodology. |
EQ based descriptions can be expressed as intersection-based class expressions. | EQ based descriptions can be expressed as intersection-based class expressions. | ||
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Proceedings of the OWLED 2007 Workshop on OWL: Experience and Direction | Proceedings of the OWLED 2007 Workshop on OWL: Experience and Direction | ||
| − | Also on the wiki: | + | Also on the wiki: [[PATO:Phenotypes_in_OWL]] |
| − | [PATO | + | [[Category:OBD]] |
| + | [[Category:PATO]] | ||
Latest revision as of 16:44, 6 May 2008
OBD uses generic modeling constructs. Domain specific modeling is left to ontologies. OBD has no information model for representing genotype-phenotype associations.
Phenotype descriptions in OBD can be pre-coordinated or post-coordinated. Post-coordinated descriptions make use of what is sometimes called the EQ model. See the PATO:About page for more details on this methodology.
EQ based descriptions can be expressed as intersection-based class expressions.
This is explained in
Chris Mungall et al Representing Phenotypes in OWL Proceedings of the OWLED 2007 Workshop on OWL: Experience and Direction
Also on the wiki: PATO:Phenotypes_in_OWL