Difference between revisions of "Ontology and Cellular Networks"
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* 9am Participant Self-Introductions | * 9am Participant Self-Introductions | ||
| − | '''Session I: | + | '''Session I: Overview of NCBC Collaborative Work in Ontology''' |
| − | * 9.15am | + | |
| + | * Moderator: Peter Lyster (NIH/NIGMS) | ||
| + | * 9.15am David States (NAMIC) | ||
| + | * 10.00am Chris Mungall (NCBO) | ||
* 11.15am Coffee | * 11.15am Coffee | ||
| − | * 11.30am | + | * 11.30am Representatives from other NCBCs |
''Afternoon'' | ''Afternoon'' | ||
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* 12.45pm Lunch Break | * 12.45pm Lunch Break | ||
| − | '''Session II: | + | '''Session II: Ontologies for Cellular Networks (Part 1)''' |
| − | * 2.00pm | + | * 2.00pm Barry Smith (NCBO): The Ontology of Networks and Pathways |
| − | * 3.30pm Coffee | + | * 2.45pm Lindsay Cowell (Duke): The Cell Ontology |
| − | * 4.00pm | + | * 3.30pm Coffee |
| + | * 4.00pm Yves Lussier / Andrea Califano (MAGNET) | ||
'''Wednesday October 31''' | '''Wednesday October 31''' | ||
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*8.30am Continental Breakfast | *8.30am Continental Breakfast | ||
| − | '''Session III: | + | '''Session III: Scientific Ontologies''' |
| + | * Moderator: Zac Kohane (i2b2) | ||
| + | |||
* 9am | * 9am | ||
*10.30am Coffee | *10.30am Coffee | ||
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*12.45pm Lunch Break | *12.45pm Lunch Break | ||
| − | '''Session IV: | + | '''Session IV: Ontologies for Cellular Networks (Part 2) |
| − | * 2.00pm | + | * 2.00pm Alan Ruttenberg (Science Commons): BioPAX and Cellular Networks |
| + | * 3.00pm TBD | ||
* 4.00pm Meeting Closes | * 4.00pm Meeting Closes | ||
Revision as of 15:04, 31 August 2007
General Information
The National Center for Biomedical Ontology will host a two-day workshop focused on ontology and cellular networks on October 30-31, 2007 in Newark, NJ. The meeting will be organized jointly with the MagNet Center for Multiscale Analysis of Genetic and Cellular Networks.
Goals
The goals of this workshop are:
- 1. to bring together those in the various NCBCs and in related organizations with an interest in ontology
- 2. to provide an introduction to the basic tools and methods of ontology
- 3. to advance the work of the Scientific Ontology SWIG
- 4. to initiate discussion on developing an ontology of cellular networks.
Agenda
Thuesday October 30
Morning
- 8.30am Registration and Continental Breakfast
- 9am Participant Self-Introductions
Session I: Overview of NCBC Collaborative Work in Ontology
- Moderator: Peter Lyster (NIH/NIGMS)
- 9.15am David States (NAMIC)
- 10.00am Chris Mungall (NCBO)
- 11.15am Coffee
- 11.30am Representatives from other NCBCs
Afternoon
- 12.45pm Lunch Break
Session II: Ontologies for Cellular Networks (Part 1)
- 2.00pm Barry Smith (NCBO): The Ontology of Networks and Pathways
- 2.45pm Lindsay Cowell (Duke): The Cell Ontology
- 3.30pm Coffee
- 4.00pm Yves Lussier / Andrea Califano (MAGNET)
Wednesday October 31
Morning
- 8.30am Continental Breakfast
Session III: Scientific Ontologies
- Moderator: Zac Kohane (i2b2)
- 9am
- 10.30am Coffee
- 11am
Afternoon
- 12.45pm Lunch Break
Session IV: Ontologies for Cellular Networks (Part 2)
- 2.00pm Alan Ruttenberg (Science Commons): BioPAX and Cellular Networks
- 3.00pm TBD
- 4.00pm Meeting Closes
Participants (Provisional List)
Robert Arp - NCBO, Buffalo, NY
Michael Ashburner - NCBO, Cambridge University Department of Genetics
Brian Athey - NCIBI, University of Michigan
Andrea Califano - MagNet, Columbia University, NY
Lindsay Cowell -- Duke University
Isaac Kohane -- i2b2 / Harvard University
Suzanna Lewis - NCBO, Berkeley, CA
Peter Lyster - NIH/NIGMS
Yves Lussier - MagNet, University of Chicago, IL
Chris Mungall -- NCBO, Berkeley, CA
[Representative] - PharmGKB, Stanford, CA
Alan Ruttenberg - Science Commons, Boston, MA
Karen Skinner - NIH/NIDA
Barry Smith - NCBO, Buffalo, NY
David States + 1 further representative - NCIBI, University of Michigan
Ross Whitaker - NA-MIC, Utah
CCB ?
SymBios ?
Venue
Hilton Hotel Newark Airport A block of rooms has been set aside for early registrants.