PATO Meeting

General Information and Registration

The National Center for Biomedical Ontology will host a two-day meeting focused on the Phenotype and Trait Ontology (PATO) December 1-2, 2006 at Stanford University in Palo Alto, CA.

Register here.

Agenda

Media:Pheno_workshop_Dec2006.pdf

Minutes and Powerpoint Slides

Minutes from Day 2 Media:Meeting_Notes.pdf

Gully Burns: Ontology engineering approaches based on semi-automated curation of the primary literature Media:GullyBurns.ppt Alexander Garcia: The use of concept maps and automatic terminology extraction during development of a domain ontology: Lessons learnt Media:AlexanderGarcia.ppt Adrien Coulet: Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing Media:Adrien Coulet.pdf Tina Hernandez-Broussard: Challenges for representing phenotype in pharmacogenomics Media:TinaHernandez.ppt James Reecy: A project for the Creation of a Unified Trait Vocabulary for Farm Animals Media:JamesReecy.ppt Victoria Petri: Rat genome database disease portals: a platform for genetic and genomic research Media:VictoriaPetri.ppt Carol A. Bastiani: WormBase phenotype ontology development, curation, and data integration Media:CarolBastiani.ppt Janan Eppig: Ontologies and vocabularies supporting data integration: emphasis on mouse phenotypes and disease Media:JananEppig.ppt Rex Chisholm: Phenotype curation tool and ontologies at dictyBase Media:RexChisholm.ppt Minna Lehvaslaiho: HIV Media:MinnaLehvaslaiho.ppt Eurie Hong: Yeast Media:EurieHong.ppt Tanya Berardini: Arabidopsis Media:TanyaBerardini.ppt Christopher Smith: Insect behavior Media:ChristopherSmith.ppt Michael Ashburner: Drosophila (live demo, no slides) Maryann Martone: BIRN Jim Balhoff: NESCENT Media:JimBalhoff.pdf