Phenote:Main Page

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Phenote - An biomedical annotation tool using ontologies

This wiki page currently serves as the public Phenote project page for posting of materials related to its development. In particular, this will be the site used for announcement and posting of working group agendas and reports/transcripts.

What is Phenote?

Phenote is a software application and open-source toolkit to facilitate annotation of biomedical data using ontologies. It is being driven by its development as a phenotype annotation tool, but is generalizable to any tool to be used for annotation using ontologies.

This is being developed by the Core 2 group with the National Center for Biomedical Ontology.

For more information, please visit the website at [1]


Request tracker

You can use the tracker (currently hosted on sourceforge) to request new items or suggest modifications


Mail list

The OBO Phenote list is for discussion of Phenote software, announcements, etc.

You can subscribe or browse the archives here:

PUG: Phenote User Group

The Phenote User group has a regularly scheduled meeting on the first Tuesday of each month, 8am (Pacific time). Please join us for our next chat on Tuesday, May 1, 2007. [instructions to follow]

A dedicated group of users are part of this evaluation team. They include:

Mark Gibson, NCBO, Developer Nicole Washington, NCBO, Developer Michael Ashburner, Flybase/NCBO, Phenotype curation Yvonne, Zfin, Phenotype curation Melissa Haendel, Zfin Gully Burns, USC, NLP support/curation David Sutherland, Flybase, curation Jim Balhoff, NESCent, evolutionary annotation Hilmar NESCent

If you'd like to join this group, please add yourself to this list and contact [Nicole Washington]

All communications for this group will be conducted on the Phenote:Main_Page#Mail_list obo-phenote mailing list.