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localConceptId <- xmlValue(getNodeSet(concept,"./localConceptId")[[1]]) preferredName <- xmlValue(getNodeSet(concept,"./preferredName")[[1]])

{| class="wikitable sortable collapsible" border="1" | {{CTS_2}} || CodeSystemCatalogEntry || 0..n || ontologyBean || 1..n ||

#*<b>1-2:30pm</b> Example scenarios from current cBiO Core 3 projects (sequence d ===Mar 1===

$| = 1; 'http://ncbolabs-dev2.stanford.edu:8080/OBS_v1/recommender1.1/';

...mith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc1UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFi ...mith/OntologyVideoFiles/Ontology09Lectures_byUB/Ontology09Disc3UB.wmv Part 1], [http://mediastream.buffalo.edu/Content/research/phismith/OntologyVideoFi

...DF representation for terms in ontologies in BioPortal (see documentation [1] for details). * Web services for retrieving instance information for OWL ontologies [1]. We are planning to release a user interface for viewing instances shortl

1 - Physical Reality 2 - Psychological Reality = our knowledge and beliefs about 1.

** 1:00 - Sean Mooney - Applications of the Annotator ** 1:00 - Coding

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*12:00-1:00 Lunch *1:00-1:30 '''''Lightning Talks from Workshop Participants'''''

...ontology recommender web service. J Biomed Semantics. 2010 Jun 22;1 Suppl 1:S1. PubMed [http://www.ncbi.nlm.nih.gov/pubmed/20626921 PMID: 20626921]; Pu ...) for the recommender: http://obs.bioontology.org/recommender/Recommender1.1.html

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:1:30 Current approaches to translation - Chris Mungall :1:30 Review of goals and outlines of possible solutions - Jim Brinkley

...name: {{CTS2_REST_base}}codesystem/LNC/version/LNC_226_RRF/entity/LP31957-1 ...rceVersionId : {{CTS2_REST_base}}codesystem/LNC/version/226/entity/LP31957-1

...l Institutes of Health through the NIH Roadmap for Medical Research, Grant 1 U54 HG004028. Its content is solely the responsibility of the organizers an '''Day 1: Wednesday, December 8'''

** isexactmatch=[1/0] – match the entire concept name (default: 0) ** includeproperties=[1/0] – include attributes in the search (default: 0)

1. Protein case study: Perform a detailed review of one class of proteins imp 1:30pm

...MA. The open biomedical annotator. Summit on Translat Bioinforma. 2009 Mar 1;2009:56-60. [http://www.ncbi.nlm.nih.gov/pubmed/21347171 PubMed PMID: 21347 ...ndu P, Iyer SV, Fairon C, Shah NH. J Biomed Semantics. 2012 Apr 24;3 Suppl 1:S5. PubMed PMID: 22541596; PubMed Central PMCID: PMC3337270.

'''1:30pm Afternoon Session'''

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...itutes of Health (NIH) through the NIH Roadmap for Medical Research, Grant 1 U 54 HG004028. Information on the National Centers for Biomedical Computing 1:30pm Participant self-introductions

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...der Union, Stanford University, [http://maps.google.com/maps/ms?ie=UTF8&fb=1&gl=us&hq=tresidder+student+union&hnear=Stanford,+CA&ecpose=37.42454663,-122 * 1:00pm '''What is an ontology and what is it useful for?''' (Barry Smith) [ht

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1. to critically evaluate the IDO core ontology for biological and ontologica '''Day 1: Tuesday, September 16'''

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*Mar 30-Apr 1, 2009, Miami, FL *Feb 27-Mar 1, 2009, Keio University, Tokyo, Japan as part of the InterOntology09 meeting

1) Go to BioPortal at http://bioportal.bioontology.org resources at the click of a mouse. Nucleic Acids Res. 2009 Jul 1;37(Web Server

=='''Workshop Day 1: Wednesday, April 25 · 8:00am-5:30pm'''== ::1:15pm Melissa Haendel (Oregon) and Jon Corson-Rikert (Cornell): CTSA''Connec

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:Day 1 will provide a survey of current ontology-based research in immunology and == Day 1: Monday, June 11, 2012 ==

'''1:00 pm Examples of Research Done with NCBO Technology (Nigam Shah and Rob Wy ::(1) Potential CTSA use cases

* 1:30 - Semantically Aware applications - who and how people are incorporating

...nding please contact [mailto:rwalls@nybg.org Ramona Walls] before February 1, 2012.

...s =def. a class all of whose members instantiate the same type T, that is (1) not itself the extension of any type, (2) defined by means of a statement ...embers instantiate one or other of a number of types, T1, ... Tn, that is (1) not itself the extension of any type, (2) defined by means of a disjunctio

Note that initially (in 2009, see [1], the service responded on average in 1.8 seconds for a mean input word count of 180 words, and in 2.3 seconds for [1] Shah et al BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S14 (https://www.ncb

'''Session 1: Wednesday 9am to 12.30pm''' '''Session 2: Wednesday 1.30pm to 5pm'''

...pagenum'''={page number} - which page of results to return. '''Default''': 1.

<averageNumberOfSiblings>1</averageNumberOfSiblings>

...imum Depth” metric for a number of ontologies. Was incorrectly displaying “1” in some cases. * Handling of obsolete terms, part 1 – term name is grayed out and <is_obsolete> element is returned in Web se

1) NCBO-OOR Sandbox - Deployment of the BioPortal software for the upcoming F The NCI has leveraged BioPortal 1.0 software as a basis for their Terminology Browser which is accessible fro

...gs_sm=&gs_upl=&bav=on.2,or.r_gc.r_pw.r_cp.,cf.osb&biw=623&bih=458&ion=1&um=1&ie=UTF-8&sa=N&tab=wl Walking directions from Doubletree Hotel] ...documentation of the BFO ontology, including an updated version of the BFO 1.0 taxonomy together with the top level relations of the Relation Ontology.

...iomedical Ontology Recommendation. Journal of Biomedical Semantics, 8(21), 1-22 (https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-017-0128-y ...iomedical Ontology Recommendation. Journal of Biomedical Semantics, 8(21), 1-22 (https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-017-0128-y