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This page lists use cases and provides examples of how these questions can be answered using NCBO software (web services and w ...terms that were used to annotate a data set, how can I see if any of these terms exist in standard ontologies?'''

...ice. If the value set is a subtree of an existing ontology, use the search service restricted to that sub branch. ...l get child nodes; or pick the desired root node and get all paths to leaf terms from that node.

...an understanding of how ontologies and terminologies are used in a variety of contexts in clinical and translational research. By the end of the tutorial, participants will be able to:

...logies (such as parents, children, or siblings of a class, roots or leaves of a class hierarchy) == [[Annotator_Web_service|'''Annotator Web Service''']] ==

This page describes representation of ontologies in the [http://bioportal.bioontology.org NCBO BioPortal] and ind ...in BioPortal so that we can have a URL to a concept that resolves to a set of RDF triples that provide essential information about the term.

...ps in the [http://bioportal.bioontology.org NCBO BioPortal], with examples of different mappings that already exist in BioPortal. We welcome comments on ...portal.bioontology.org/mappings BioPortal Mappings]: the BioPortal mapping service

...zes the NCBO Web services and allows users to visualize ontologies, to map terms in ontologies to one another, and to add comments on ontologies that can gu ...problems in biomedical informatics. The tutorial will demonstrate the use of Web services provided by NCBO to perform tasks such as semantic data integr

''This page contains software release notes for the 2.x series of [http://bioportal.bioontology.org/ BioPortal].'' ....php/BioPortal_Mappings_Service ) ''Please note, the prototype Mapping Web service will be removed March 23''

...its [http://www.bioontology.org/wiki/index.php/Meetings_and_Events series of training and dissemination events]. ...kground in bioinformatics or medical informatics is required. No knowledge of ontology is presupposed.

...ur API key will be displayed. The addition of the API key replaces the use of the email parameter. ...ur API key will be displayed. The addition of the API key replaces the use of the email parameter.

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== Web Services and Development of Semantic Applications == * Software editor of your choice

...oject, a discussion of some of the issues that were encountered and a list of what remains to be resolved. ...t can use Ajax widgets to browse and access ontology content for a variety of uses (see [[Using_NCBO_Technology_In_Your_Project]]).

...ologies. The custom lexicons built by our system can be used for a variety of natural language processing and other ontology related tasks. ...old data is changed/deleted, the users can simply retrieve a newer version of their lexicon using our services.

...shut down. This decision was made due to lack of resources to maintain the service. We understand the impact this may have on your workflows and apologize for ...QL service, that is in BETA status, is stable for testing by our community of users. If you encounter any errors or unexpected behavior please report it

...tured organization of knowledge and improving access to large repositories of biomedical knowledge and data. If you would like to install your own local instance of BioPortal, please review the documentation for the [http://www.bioontology.

''This page contains software release notes for the 3.x series of [http://bioportal.bioontology.org/ BioPortal].'' * Implemented the display of the OBO part-of relationship in the term neighborhood visualization.

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'''10:30am Foundations of Biomedical Ontology (Barry Smith)''' ::The problem of data silos

== List all the latest version of ontologies == ...includes a link to the CURRENT version of the code system. It lacks some of the detail in the latest version list but, unless we find issues or require

This documentation describes the current version of the API. Some changes may append in the future. The Resource index API is based on the web service that returns annotations from the Resource Index (called via a REST post).

BioPortal uses Notes to describe a variety of user-specified comments and metadata for an ontology, including new term pr The prefix for all production service URLs in the table below is http://rest.bioontology.org/bioportal

...ionships between those concepts. It is used to reason about the properties of that domain, and may be used to define the domain. resources at the click of a mouse. Nucleic Acids Res. 2009 Jul 1;37(Web Server

...part of the series of Dissemination Workshops organized under the auspices of the National Center for ...ology (IDO) is a general terminology, taxonomy, and logical representation of entities relevant to all

* [[#Browse Tab|browse the library]] of ontologies * [[#Mappings Tab|browse mappings]] between terms in different ontologies

''This page contains software release notes for the 4.x series of [http://bioportal.bioontology.org/ BioPortal].'' * Loaded 2016AA version of the UMLS terminologies into BioPortal (NCBO-1711).