Difference between revisions of "Workshop Agenda"
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#<b>Background and motivation (9AM-10AM)</b> | #<b>Background and motivation (9AM-10AM)</b> | ||
#* Brief overview of major biological problems BIRN seeks to address <b>[BIRN]</b> | #* Brief overview of major biological problems BIRN seeks to address <b>[BIRN]</b> | ||
| − | #<b>Tools ( | + | #*<b>10-10:15am</b>Break |
| + | #<b>Tools (10:15AM-Noon)</b> | ||
#* Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) <b>[BIRN]</b> | #* Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) <b>[BIRN]</b> | ||
#* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) <b>[Stanford]</b> | #* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) <b>[Stanford]</b> | ||
#* Expressing biological concepts in terms of an ontology <b>[Stanford]</b> | #* Expressing biological concepts in terms of an ontology <b>[Stanford]</b> | ||
#<b>Ontology Usage (1PM-5PM)</b> | #<b>Ontology Usage (1PM-5PM)</b> | ||
| − | #* | + | #*<b>1-2:30pm</b> Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO) <b>[Stanford]</b> |
| − | #* | + | #*<b>2:30-3pm</b>Break |
| − | #* Image annotation with ontologies <b>[Stanford]</b> | + | #*<b>3-4pm</b> Possible future directions (formal relation ontologies and composed annotations) <b>[Stanford]</b> |
| + | #*<b>4-5pm</b> Image annotation with ontologies <b>[Stanford]</b> | ||
===Mar 1=== | ===Mar 1=== | ||
#<b>Basics of Ontologies (9AM-Noon)</b> | #<b>Basics of Ontologies (9AM-Noon)</b> | ||
#*<b>9-10am</b> Discuss current capabilities and challenges related to ontologies in BIRN <b>[BIRN]</b> | #*<b>9-10am</b> Discuss current capabilities and challenges related to ontologies in BIRN <b>[BIRN]</b> | ||
| + | #*<b>10-10:30</b>Break | ||
#*<b>10:30-11:30</b> How to Build an Ontology <b>[Barry]</b> | #*<b>10:30-11:30</b> How to Build an Ontology <b>[Barry]</b> | ||
#*<b>11:30-noon</b> The Ontology of Spatial Relations <b>[Barry]</b> | #*<b>11:30-noon</b> The Ontology of Spatial Relations <b>[Barry]</b> | ||
| Line 20: | Line 23: | ||
#** BIRN Ontologies: An Overview <b>[Barry]</b> | #** BIRN Ontologies: An Overview <b>[Barry]</b> | ||
#** The Ontology of Spatial Relations <b>[Barry]</b> | #** The Ontology of Spatial Relations <b>[Barry]</b> | ||
| − | #<b>Potential Applications: what do we need to get there from here? ( | + | #*<b>3-3:30pm</b>Break |
| + | #<b>Potential Applications: what do we need to get there from here? (3:30PM-5PM)</b> | ||
#* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | #* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery | ||
#* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | #* Computer reasoning with neuroanatomical/spatial component of Neuroscience data | ||
Revision as of 10:11, 12 February 2006
Feb 28
- Background and motivation (9AM-10AM)
- Brief overview of major biological problems BIRN seeks to address [BIRN]
- 10-10:15amBreak
- Tools (10:15AM-Noon)
- Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) [BIRN]
- Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) [Stanford]
- Expressing biological concepts in terms of an ontology [Stanford]
- Ontology Usage (1PM-5PM)
- 1-2:30pm Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO) [Stanford]
- 2:30-3pmBreak
- 3-4pm Possible future directions (formal relation ontologies and composed annotations) [Stanford]
- 4-5pm Image annotation with ontologies [Stanford]
Mar 1
- Basics of Ontologies (9AM-Noon)
- 9-10am Discuss current capabilities and challenges related to ontologies in BIRN [BIRN]
- 10-10:30Break
- 10:30-11:30 How to Build an Ontology [Barry]
- 11:30-noon The Ontology of Spatial Relations [Barry]
- Content (1PM-3PM)
- 1-2pm Best practices; lessons learned from other ontology development projects [Barry]
- 2-3pm Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
- BIRN Ontologies: An Overview [Barry]
- The Ontology of Spatial Relations [Barry]
- 3-3:30pmBreak
- Potential Applications: what do we need to get there from here? (3:30PM-5PM)
- Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
- Computer reasoning with neuroanatomical/spatial component of Neuroscience data